moved to org.biojava

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 5036a0b..cc57961 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -68,6 +68,7 @@ public class AlignFrame
    */\r
   public AlignFrame(AlignmentI al)\r
   {\r
+\r
     viewport = new AlignViewport(al);\r
 \r
     this.setDropTarget(new java.awt.dnd.DropTarget(this, this));\r
@@ -857,7 +858,7 @@ public class AlignFrame
            for(int i=0; i<hc.size(); i++)\r
            {\r
              int [] region = (int[]) hc.elementAt(i);\r
-             af.viewport.hideColumns(region[0], region[1]+1);\r
+             af.viewport.hideColumns(region[0], region[1]);\r
            }\r
          }\r
 \r
@@ -1415,7 +1416,7 @@ public class AlignFrame
 \r
   public void showAllColumns_actionPerformed(ActionEvent e)\r
   {\r
-    viewport.getColumnSelection().revealAllHiddenColumns(viewport);\r
+    viewport.showAllHiddenColumns();\r
   }\r
 \r
   public void hideSelSequences_actionPerformed(ActionEvent e)\r
@@ -1431,13 +1432,14 @@ public class AlignFrame
     {\r
       viewport.hideSequence(seqs[i]);\r
     }\r
+\r
     alignPanel.repaint();\r
   }\r
 \r
   public void hideSelColumns_actionPerformed(ActionEvent e)\r
   {\r
     viewport.hideSelectedColumns();\r
-    repaint();\r
+    alignPanel.repaint();\r
   }\r
 \r
   public void hiddenMarkers_actionPerformed(ActionEvent e)\r