Merge branch 'develop' into features/JAL-653_JAL-1766_htslib_refseqsupport

[jalview.git] / src / jalview / gui / AlignFrame.java

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index c12cb54..d161cfd 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -96,6 +96,8 @@ import jalview.schemes.ZappoColourScheme;
 import jalview.structure.StructureSelectionManager;
 import jalview.util.MessageManager;
 import jalview.viewmodel.AlignmentViewport;
+import jalview.ws.DBRefFetcher;
+import jalview.ws.DBRefFetcher.FetchFinishedListenerI;
 import jalview.ws.SequenceFetcher;
 import jalview.ws.jws1.Discoverer;
 import jalview.ws.jws2.Jws2Discoverer;
@@ -5549,15 +5551,23 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       {
         new Thread(new Runnable()
         {
-
           @Override
           public void run()
           {
-            boolean isNuclueotide = alignPanel.alignFrame.getViewport()
+            boolean isNucleotide = alignPanel.alignFrame.getViewport()
                     .getAlignment().isNucleotide();
-            new jalview.ws.DBRefFetcher(alignPanel.av
+            DBRefFetcher dbRefFetcher = new DBRefFetcher(alignPanel.av
                     .getSequenceSelection(), alignPanel.alignFrame, null,
-                    alignPanel.alignFrame.featureSettings, isNuclueotide)
+                    alignPanel.alignFrame.featureSettings, isNucleotide);
+            dbRefFetcher.addListener(new FetchFinishedListenerI()
+            {
+              @Override
+              public void finished()
+              {
+                AlignFrame.this.setMenusForViewport();
+              }
+            });
+            dbRefFetcher
                     .fetchDBRefs(false);
           }
         }).start();
@@ -5626,14 +5636,24 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                       @Override
                       public void run()
                       {
-                        boolean isNuclueotide = alignPanel.alignFrame
+                        boolean isNucleotide = alignPanel.alignFrame
                                 .getViewport().getAlignment()
                                 .isNucleotide();
-                        new jalview.ws.DBRefFetcher(alignPanel.av
-                                .getSequenceSelection(),
+                        DBRefFetcher dbRefFetcher = new DBRefFetcher(
+                                alignPanel.av.getSequenceSelection(),
                                 alignPanel.alignFrame, dassource,
                                 alignPanel.alignFrame.featureSettings,
-                                isNuclueotide).fetchDBRefs(false);
+                                isNucleotide);
+                        dbRefFetcher
+                                .addListener(new FetchFinishedListenerI()
+                                {
+                                  @Override
+                                  public void finished()
+                                  {
+                                    AlignFrame.this.setMenusForViewport();
+                                  }
+                                });
+                        dbRefFetcher.fetchDBRefs(false);
                       }
                     }).start();
                   }
@@ -5666,14 +5686,24 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                       @Override
                       public void run()
                       {
-                        boolean isNuclueotide = alignPanel.alignFrame
+                        boolean isNucleotide = alignPanel.alignFrame
                                 .getViewport().getAlignment()
                                 .isNucleotide();
-                        new jalview.ws.DBRefFetcher(alignPanel.av
-                                .getSequenceSelection(),
+                        DBRefFetcher dbRefFetcher = new DBRefFetcher(
+                                alignPanel.av.getSequenceSelection(),
                                 alignPanel.alignFrame, dassource,
                                 alignPanel.alignFrame.featureSettings,
-                                isNuclueotide).fetchDBRefs(false);
+                                isNucleotide);
+                        dbRefFetcher
+                                .addListener(new FetchFinishedListenerI()
+                                {
+                                  @Override
+                                  public void finished()
+                                  {
+                                    AlignFrame.this.setMenusForViewport();
+                                  }
+                                });
+                        dbRefFetcher.fetchDBRefs(false);
                       }
                     }).start();
                   }
@@ -5721,14 +5751,24 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                         @Override
                         public void run()
                         {
-                          boolean isNuclueotide = alignPanel.alignFrame
+                          boolean isNucleotide = alignPanel.alignFrame
                                   .getViewport().getAlignment()
                                   .isNucleotide();
-                          new jalview.ws.DBRefFetcher(alignPanel.av
-                                  .getSequenceSelection(),
+                          DBRefFetcher dbRefFetcher = new DBRefFetcher(
+                                  alignPanel.av.getSequenceSelection(),
                                   alignPanel.alignFrame, dassrc,
                                   alignPanel.alignFrame.featureSettings,
-                                  isNuclueotide).fetchDBRefs(false);
+                                  isNucleotide);
+                          dbRefFetcher
+                                  .addListener(new FetchFinishedListenerI()
+                                  {
+                                    @Override
+                                    public void finished()
+                                    {
+                                      AlignFrame.this.setMenusForViewport();
+                                    }
+                                  });
+                          dbRefFetcher.fetchDBRefs(false);
                         }
                       }).start();
                     }