viewport.getIgnoreGapsConsensus());
sg.cs.setConsensus(AAFrequency.calculate(
- sg.getSequences(true), 0,
- sg.getWidth()));
+ sg.getSequences(true), sg.getStartRes(),
+ sg.getEndRes()+1));
}
else
sg.cs.setThreshold(0, viewport.getIgnoreGapsConsensus());
{
Conservation c = new Conservation("Group",
ResidueProperties.propHash, 3,
- sg.getSequences(true), 0,
- viewport.alignment.getWidth() - 1);
+ sg.getSequences(true),
+ sg.getStartRes(),
+ sg.getEndRes()+1);
c.calculate();
c.verdict(false, viewport.ConsPercGaps);
sg.cs.setConservation(c);