JAL-885; Structure conservation row is just added if alignment

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 1dbcf56..0a9cad4 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -413,17 +413,22 @@ public class AlignViewport implements SelectionSource, VamsasSource
       consensus.hasText = true;
       consensus.autoCalculated = true;
 
-      // TODO check if this can done accordingly
-      strucConsensus = new AlignmentAnnotation("StrucConsensus", "PID",
-              new Annotation[1], 0f, 100f, AlignmentAnnotation.BAR_GRAPH);
-      strucConsensus.hasText = true;
-      strucConsensus.autoCalculated = true;
-
+      if (alignment.isNucleotide())
+      {
+        strucConsensus = new AlignmentAnnotation("StrucConsensus", "PID",
+                new Annotation[1], 0f, 100f, AlignmentAnnotation.BAR_GRAPH);
+        strucConsensus.hasText = true;
+        strucConsensus.autoCalculated = true;
+      }
+      
       if (Cache.getDefault("SHOW_IDENTITY", true))
       {
         alignment.addAnnotation(consensus);
         // TODO: Make own if for structure
-        alignment.addAnnotation(strucConsensus);
+        if (alignment.isNucleotide())
+        {
+          alignment.addAnnotation(strucConsensus);
+        }
       }
 
     }