system.exit or destroy if applet or app

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index b21f47e..1c6c453 100755 (executable)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -20,9 +20,7 @@ public class AlignViewport
   boolean showColourText=false;\r
   boolean showBoxes=true;\r
   boolean wrapAlignment=false;\r
-  boolean renderGaps = false;\r
-  boolean groupEdit    = false;\r
-  boolean groupDefiningMode = true;\r
+  boolean renderGaps = true;\r
 \r
   ColourSchemeI globalColourScheme = null;\r
   boolean conservationColourSelected = false;\r
@@ -39,7 +37,7 @@ public class AlignViewport
   Font            font = new Font("SansSerif",Font.PLAIN,10);\r
   AlignmentI      alignment;\r
 \r
-  Selection       sel    = new Selection();\r
+  Selection       sel    = new Selection(this);\r
   ColumnSelection colSel = new ColumnSelection();\r
 \r
   OutputGenerator og;\r
@@ -276,15 +274,7 @@ public class AlignViewport
   public boolean getShowBoxes() {\r
     return showBoxes;\r
   }\r
- // public CommandParser getCommandLog() {\r
- ///   return log;\r
- // }\r
-  public boolean getGroupEdit() {\r
-    return groupEdit;\r
-  }\r
-  public void setGroupEdit(boolean state) {\r
-    groupEdit = state;\r
-  }\r
+\r
   public char getGapCharacter() {\r
     return getAlignment().getGapCharacter();\r
   }\r