Dont calculate conservation for nucleotides

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 3420993..2922f09 100755 (executable)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -138,6 +138,7 @@ public class AlignViewport
         // We must set conservation and consensus before setting colour,\r
         // as Blosum and Clustal require this to be done\r
         updateConservation();\r
+\r
         updateConsensus();\r
 \r
         if (jalview.bin.Cache.getProperty("DEFAULT_COLOUR") != null)\r
@@ -175,6 +176,9 @@ public class AlignViewport
      */\r
     public void updateConservation()\r
     {\r
+      if(alignment.isNucleotide())\r
+          return;\r
+\r
       try{\r
         Conservation cons = new jalview.analysis.Conservation("All",\r
             jalview.schemes.ResidueProperties.propHash, 3,\r