boolean renderGaps = true;
- boolean showSequenceFeatures = false;
-
- private boolean showAnnotation = true;
-
SequenceAnnotationOrder sortAnnotationsBy = null;
int charHeight;
boolean cursorMode = false;
- /**
- * Keys are the feature types which are currently visible. Note: Values are
- * not used!
- */
- private Hashtable featuresDisplayed = null;
-
boolean antiAlias = false;
Rectangle explodedPosition;
Color textColour = Color.black;
Color textColour2 = Color.white;
-
private boolean rightAlignIds = false;
private AnnotationColumnChooser currentAnnotationColumnSelectionState;
}
/**
- * set the flag
- *
- * @param b
- * features are displayed if true
- */
- public void setShowSequenceFeatures(boolean b)
- {
- showSequenceFeatures = b;
- }
-
- public boolean getShowSequenceFeatures()
- {
- return showSequenceFeatures;
- }
-
- /**
* centre columnar annotation labels in displayed alignment annotation TODO:
* add to jalviewXML and annotation display settings
*/
*
* @return DOCUMENT ME!
*/
- public boolean getShowAnnotation()
- {
- return isShowAnnotation();
- }
-
- /**
- * DOCUMENT ME!
- *
- * @param b
- * DOCUMENT ME!
- */
- public void setShowAnnotation(boolean b)
- {
- showAnnotation = b;
- }
-
- /**
- * DOCUMENT ME!
- *
- * @return DOCUMENT ME!
- */
public boolean getScaleAboveWrapped()
{
return scaleAboveWrapped;
return followSelection;
}
- boolean showSeqFeaturesHeight;
-
public void sendSelection()
{
jalview.structure.StructureSelectionManager
new ColumnSelection(getColumnSelection()), this);
}
- public void setShowSequenceFeaturesHeight(boolean selected)
- {
- showSeqFeaturesHeight = selected;
- }
-
- public boolean getShowSequenceFeaturesHeight()
- {
- return showSeqFeaturesHeight;
- }
-
/**
* return the alignPanel containing the given viewport. Use this to get the
* components currently handling the given viewport.
}
}
-
- public Hashtable getFeaturesDisplayed()
- {
- return featuresDisplayed;
- }
-
- public void setFeaturesDisplayed(Hashtable featuresDisplayed)
- {
- this.featuresDisplayed = featuresDisplayed;
- }
protected SequenceAnnotationOrder getSortAnnotationsBy()
{
return sortAnnotationsBy;
this.showAutocalculatedAbove = showAutocalculatedAbove;
}
+
public boolean isShowAnnotation()
{
- return showAnnotation;
+ return super.isShowAnnotation();
}
public boolean isRightAlignIds()