Autocalculate consensus

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index a92517c..2c8172b 100755 (executable)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -86,6 +86,7 @@ public class AlignViewport
     AlignmentAnnotation consensus;\r
     AlignmentAnnotation conservation;\r
     AlignmentAnnotation quality;\r
+    boolean autoCalculateConsensus = true;\r
 \r
     /** DOCUMENT ME!! */\r
     public int ConsPercGaps = 25; // JBPNote : This should be a scalable property!\r
@@ -99,6 +100,8 @@ public class AlignViewport
 \r
     boolean antiAlias = false;\r
 \r
+    boolean padGaps = false;\r
+\r
 \r
     public AlignViewport(AlignmentI al, boolean dataset)\r
     {\r