boolean conservationColourSelected = false;\r
boolean abovePIDThreshold = false;\r
\r
- SequenceGroup rubberbandGroup = null;\r
+ SequenceGroup selectionGroup = new SequenceGroup();\r
\r
RendererI renderer = new SequenceRenderer(this);\r
\r
Font font = new Font("SansSerif",Font.PLAIN,10);\r
AlignmentI alignment;\r
\r
- Selection sel = new Selection(this);\r
ColumnSelection colSel = new ColumnSelection();\r
\r
String visibleConsensus;\r
return consensus;\r
}\r
\r
- public SequenceGroup getRubberbandGroup()\r
+ public SequenceGroup getSelectionGroup()\r
{\r
- return rubberbandGroup;\r
+ return selectionGroup;\r
}\r
\r
- public void setRubberbandGroup(SequenceGroup sg)\r
+ public void setSelectionGroup(SequenceGroup sg)\r
{\r
- rubberbandGroup = sg;\r
+ selectionGroup = sg;\r
}\r
\r
+\r
public boolean getConservationSelected()\r
{\r
return conservationColourSelected;\r
}\r
return -1;\r
}\r
- public Selection getSelection() {\r
- return sel;\r
- }\r
+\r
public ColumnSelection getColumnSelection() {\r
return colSel;\r
}\r