JAL-2668 add tests for HMMER commands, annotation and io

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 2005b91..3be48d6 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -285,6 +285,8 @@ public class AlignViewport extends AlignmentViewport implements
       showOccupancy = Cache.getDefault(Preferences.SHOW_OCCUPANCY, true);
     }
     initAutoAnnotation();
+    initInformation();
+
     String colourProperty = alignment.isNucleotide() ? Preferences.DEFAULT_COLOUR_NUC
             : Preferences.DEFAULT_COLOUR_PROT;
     String schemeName = Cache.getProperty(colourProperty);
@@ -703,6 +705,7 @@ public class AlignViewport extends AlignmentViewport implements
     return normaliseSequenceLogo;
   }
 
+
   public void setNormaliseSequenceLogo(boolean state)
   {
     normaliseSequenceLogo = state;
@@ -1157,8 +1160,9 @@ public class AlignViewport extends AlignmentViewport implements
   @Override
   public boolean isNormaliseHMMSequenceLogo()
   {
-    // TODO Auto-generated method stub
     return normaliseHMMSequenceLogo;
   }
 
+
+
 }