JAL-2388 Reverted to previous

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index f1bb8de..7bebfa9 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -150,11 +150,10 @@ public class AlignViewport extends AlignmentViewport implements
   public AlignViewport(AlignmentI al, ColumnSelection hiddenColumns)
   {
     setAlignment(al);
-    posProps.setHiddenColumns(hiddenColumns);
-    /*if (hiddenColumns != null)
+    if (hiddenColumns != null)
     {
       colSel = hiddenColumns;
-    }*/
+    }
     init();
   }
 
@@ -198,11 +197,10 @@ public class AlignViewport extends AlignmentViewport implements
       Cache.log.debug("Setting viewport's view id : " + viewId);
     }
     setAlignment(al);
-    posProps.setHiddenColumns(hiddenColumns);
-    /*if (hiddenColumns != null)
+    if (hiddenColumns != null)
     {
       colSel = hiddenColumns;
-    }*/
+    }
     init();
   }
 
@@ -535,9 +533,7 @@ public class AlignViewport extends AlignmentViewport implements
     {
       end = alignment.getWidth();
     }
-    viscontigs = posProps.getColumnSelection()
-            .getVisibleContigs(start, end);
-    // viscontigs = colSel.getVisibleContigs(start, end);
+    viscontigs = colSel.getVisibleContigs(start, end);
     return viscontigs;
   }