JAL-2025 added code to stanitise query for structure by sequence name which contains...

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 8378f30..92c6355 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -926,7 +926,7 @@ public class AlignViewport extends AlignmentViewport implements
      * is a pre-requisite for building mappings.
      */
     al.setDataset(null);
-    AlignmentUtils.mapProteinToCdna(protein, cdna);
+    AlignmentUtils.mapProteinAlignmentToCdna(protein, cdna);
 
     /*
      * Create the AlignFrame for the added alignment. If it is protein, mappings
@@ -1072,7 +1072,7 @@ public class AlignViewport extends AlignmentViewport implements
       // TODO would like next line without cast but needs more refactoring...
       final AlignmentPanel complementPanel = ((AlignViewport) getCodingComplement())
               .getAlignPanel();
-      complementPanel.setFollowingComplementScroll(true);
+      complementPanel.setDontScrollComplement(true);
       complementPanel.scrollToCentre(sr, verticalOffset);
     }
   }