JAL-1780 more support for export setting for flatfile output

[jalview.git] / src / jalview / gui / AlignViewport.java

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 8ecf19d..a6f7d41 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -54,6 +54,7 @@ import javax.swing.JOptionPane;
 import jalview.analysis.AlignmentUtils;
 import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
 import jalview.analysis.NJTree;
+import jalview.api.AlignExportSettingI;
 import jalview.api.AlignViewportI;
 import jalview.api.FeatureRenderer;
 import jalview.api.ViewStyleI;
@@ -99,6 +100,10 @@ public class AlignViewport extends AlignmentViewport implements
 
   private FeatureRenderer featureRenderer;
 
+  private boolean includeHiddenRegion = true;
+
+  private AlignExportSettingI exportSettings;
+
   String viewName;
 
   /*
@@ -1051,4 +1056,14 @@ public class AlignViewport extends AlignmentViewport implements
   {
     this.featureRenderer = featureRenderer;
   }
+
+  public AlignExportSettingI getExportSettings()
+  {
+    return exportSettings;
+  }
+
+  public void setExportSettings(AlignExportSettingI exportSettings)
+  {
+    this.exportSettings = exportSettings;
+  }
 }