import jalview.analysis.AlignmentUtils;
import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
import jalview.analysis.NJTree;
+import jalview.api.AlignExportSettingI;
import jalview.api.AlignViewportI;
import jalview.api.FeatureRenderer;
import jalview.api.ViewStyleI;
private FeatureRenderer featureRenderer;
private boolean includeHiddenRegion = true;
+
+ private AlignExportSettingI exportSettings;
+
String viewName;
/*
this.featureRenderer = featureRenderer;
}
- public boolean isIncludeHiddenRegion()
+ public AlignExportSettingI getExportSettings()
{
- return includeHiddenRegion;
+ return exportSettings;
}
- public void setIncludeHiddenRegion(boolean includeHiddenRegion)
+ public void setExportSettings(AlignExportSettingI exportSettings)
{
- this.includeHiddenRegion = includeHiddenRegion;
+ this.exportSettings = exportSettings;
}
}