setFont(new Font(fontName, style, Integer.parseInt(fontSize)), true);
- alignment
- .setGapCharacter(Cache.getDefault("GAP_SYMBOL", "-").charAt(0));
-
+ if (Cache.getDefault("NORMALISE_GAPS", true))
+ {
+ alignment.setGapCharacter(Cache.getDefault("GAP_SYMBOL", "-").charAt(
+ 0));
+ }
// We must set conservation and consensus before setting colour,
// as Blosum and Clustal require this to be done
if (hconsensus == null && !isDataset)