colSel.hideColumns(start);\r
else\r
colSel.hideColumns(start, end);\r
- setSelectionGroup(null);\r
+\r
hasHiddenColumns = true;\r
}\r
\r
+ public void hideAllSelectedSeqs()\r
+ {\r
+ if (selectionGroup == null)\r
+ return;\r
+\r
+ SequenceI[] seqs = selectionGroup.getSequencesInOrder(alignment);\r
+\r
+ for (int i = 0; i < seqs.length; i++)\r
+ {\r
+ alignment.getHiddenSequences().hideSequence(seqs[i]);\r
+ }\r
+ firePropertyChange("alignment", null, alignment.getSequences());\r
+ hasHiddenRows = true;\r
+ setSelectionGroup(null);\r
+ }\r
+\r
public void hideSequence(SequenceI seq)\r
{\r
if(seq!=null)\r
{\r
alignment.getHiddenSequences().hideSequence(seq);\r
hasHiddenRows = true;\r
+ firePropertyChange("alignment", null, alignment.getSequences());\r
}\r
}\r
\r
public void showSequence(int index)\r
{\r
- alignment.getHiddenSequences().showSequence(index);\r
+ Vector tmp = alignment.getHiddenSequences().showSequence(index);\r
+ if(tmp.size()>0)\r
+ {\r
+ if(selectionGroup==null)\r
+ {\r
+ selectionGroup = new SequenceGroup();\r
+ selectionGroup.setEndRes(alignment.getWidth()-1);\r
+ }\r
+\r
+ for (int t = 0; t < tmp.size(); t++)\r
+ {\r
+ selectionGroup.addSequence(\r
+ (SequenceI) tmp.elementAt(t), false\r
+ );\r
+ }\r
+ firePropertyChange("alignment", null, alignment.getSequences());\r
+ }\r
\r
if(alignment.getHiddenSequences().getSize()<1)\r
hasHiddenRows = false;\r
{\r
if(alignment.getHiddenSequences().getSize()>0)\r
{\r
- alignment.getHiddenSequences().showAll();\r
+ if(selectionGroup==null)\r
+ {\r
+ selectionGroup = new SequenceGroup();\r
+ selectionGroup.setEndRes(alignment.getWidth()-1);\r
+ }\r
+ Vector tmp = alignment.getHiddenSequences().showAll();\r
+ for(int t=0; t<tmp.size(); t++)\r
+ {\r
+ selectionGroup.addSequence(\r
+ (SequenceI)tmp.elementAt(t), false\r
+ );\r
+ }\r
+ firePropertyChange("alignment", null, alignment.getSequences());\r
hasHiddenRows = false;\r
}\r
}\r
\r
+ public void invertColumnSelection()\r
+ {\r
+ int column;\r
+ for(int i=0; i<alignment.getWidth(); i++)\r
+ {\r
+ column = i;\r
+\r
+ if(colSel.contains(column))\r
+ colSel.removeElement(column);\r
+ else\r
+ colSel.addElement(column);\r
+\r
+ }\r
+\r
+ }\r
+\r
public int adjustForHiddenSeqs(int alignmentIndex)\r
{\r
return alignment.getHiddenSequences().adjustForHiddenSeqs(alignmentIndex);\r