* If any cDNA/protein mappings can be made between the alignments, offer to
* open a linked alignment with split frame option.
*/
- if (Cache.getDefault(Preferences.ENABLE_SPLIT_FRAME, false))
+ if (Cache.getDefault(Preferences.ENABLE_SPLIT_FRAME, true))
{
if (AlignmentUtils.isMappable(al, getAlignment()))
{
if (openSplitPane)
{
+ al.alignAs(thisAlignment);
protein = openSplitFrame(newAlignFrame, thisAlignment,
protein.getCodonFrames());
}