add control a key to select all
[jalview.git] / src / jalview / gui / AlignmentPanel.java
index 9d6467a..0808f17 100755 (executable)
@@ -43,12 +43,13 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
 \r
     addComponentListener(new ComponentAdapter()\r
    {\r
-       public void componentResized(ComponentEvent evt)\r
+     public void componentResized(ComponentEvent evt)\r
      {\r
           RefreshPanels();\r
      }\r
    });\r
 \r
+\r
    hscroll.setFocusable(false);\r
    vscroll.setFocusable(false);\r
    setFocusable(true);\r
@@ -57,11 +58,34 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
    {\r
      public void keyPressed(KeyEvent evt)\r
      {\r
-       if(evt.getKeyCode()==27)\r
+       switch(evt.getKeyCode())\r
        {\r
-         av.setRubberbandGroup(null);\r
-         RefreshPanels();\r
+         case 27: // escape key\r
+           av.setRubberbandGroup(null);\r
+           RefreshPanels();\r
+           break;\r
+         case KeyEvent.VK_X:\r
+           alignFrame.cut_actionPerformed(null);\r
+           break;\r
+         case KeyEvent.VK_C:\r
+           alignFrame.copy_actionPerformed(null);\r
+           break;\r
+         case KeyEvent.VK_V:\r
+           alignFrame.paste(true);\r
+           break;\r
+         case KeyEvent.VK_A:\r
+           alignFrame.selectAllSequenceMenuItem_actionPerformed(null);\r
+           break;\r
+\r
        }\r
+\r
+      /* public void doKeyPressed(KeyEvent evt)\r
+       {\r
+\r
+         if (evt.isControlDown() && evt.getKeyChar() == 'f')\r
+           findMenuItem_actionPerformed(null);\r
+       }*/\r
+\r
      }\r
    });\r
 \r
@@ -112,12 +136,17 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
 \r
   public void setWrapAlignment(boolean wrap)\r
   {\r
-      scalePanelHolder.setVisible(!wrap);\r
-      scorePanelHolder.setVisible(!wrap);\r
+    scorePanelHolder.setVisible(!wrap);\r
+    scalePanelHolder.setVisible(!wrap);\r
+    secondaryPanelHolder.setVisible(!wrap);\r
+\r
+    hscroll.setVisible(!wrap);\r
+\r
+    idSpaceFillerPanel.setVisible(!wrap);\r
+    idSpaceFillerPanel1.setVisible(!wrap);\r
+\r
+    RefreshPanels();\r
 \r
-      hscroll.setVisible(!wrap);\r
-      idSpaceFillerPanel.setVisible(!wrap);\r
-      idSpaceFillerPanel1.setVisible(!wrap);\r
   }\r
 \r
 \r
@@ -151,6 +180,17 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
     seqPanel.seqCanvas.paintFlag = true;\r
     idPanel.idCanvas.paintFlag = true;\r
     idPanelHolder.setPreferredSize( idPanel.idCanvas.getPreferredSize() );\r
+\r
+    if(av.getWrapAlignment())\r
+    {\r
+      int max = av.alignment.getWidth()/ (seqPanel.seqCanvas.getWidth()/av.charWidth)+1;\r
+\r
+      int h  = (av.alignment.getHeight() + 2)*av.charHeight;\r
+      vextent = seqPanel.seqCanvas.getHeight()/h;\r
+      vscroll.setValues(0,vextent,0,max);\r
+    }\r
+    else\r
+\r
     setScrollValues(av.getStartRes(), av.getStartSeq());\r
     av.getConsensus(true);\r
     if(overviewPanel!=null)\r
@@ -202,9 +242,24 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
 \r
     if (evt.getSource() == vscroll)\r
     {\r
-        int offy = vscroll.getValue();\r
+      int offy = vscroll.getValue();\r
+      if (av.getWrapAlignment())\r
+      {\r
+        av.setStartRes( vscroll.getValue() * av.getChunkWidth());\r
+        // System.out.println(vscroll.getValue()+" "+ av.getChunkWidth());\r
+      //  int resSpan = av.alignment.getWidth()/ (seqPanel.seqCanvas.getWidth()/av.charWidth)+1;\r
+     //   int h  = (av.alignment.getHeight() + 2)*av.charHeight;\r
+      //  vextent = seqPanel.seqCanvas.getHeight()/h;\r
+     //   vscroll.setValues(0,vextent,0,max);\r
+\r
+\r
+      // av.setStartSeq(  );\r
+      }\r
+      else\r
+      {\r
         av.setStartSeq(offy);\r
-        av.setEndSeq(offy + seqPanel.seqCanvas.getHeight()/av.getCharHeight());\r
+        av.setEndSeq(offy + seqPanel.seqCanvas.getHeight() / av.getCharHeight());\r
+      }\r
     }\r
 \r
 \r
@@ -216,8 +271,13 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
   }\r
 \r
 \r
+\r
   public int print(Graphics pg, PageFormat pf, int pi) throws PrinterException\r
   {\r
+    if(av.getWrapAlignment())\r
+    {\r
+     return PrintWrappedAlignment(pg, pf, pi);\r
+    }\r
 \r
     pg.translate((int)pf.getImageableX(), (int)pf.getImageableY());\r
 \r
@@ -225,6 +285,7 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
     int pheight = (int)pf.getImageableHeight();\r
     int idWidth = (int)idPanel.idCanvas.getLabelWidth().getWidth();\r
 \r
+\r
     pg.setColor(Color.white);\r
     pg.fillRect(0,0,pwidth, pheight);\r
     pg.setFont( av.getFont() );\r
@@ -296,6 +357,77 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
     return Printable.PAGE_EXISTS;\r
   }\r
 \r
+  class VPanel extends javax.swing.JPanel\r
+  {\r
+    Image image;\r
+    public VPanel(Image i)\r
+    {\r
+      image = i;\r
+      repaint();\r
+    }\r
+    public void paintComponent(Graphics g)\r
+    {\r
+      if(image!=null)\r
+        g.drawImage(image,0,0,this);\r
+    }\r
+\r
+  }\r
+\r
+  public int PrintWrappedAlignment(Graphics pg, PageFormat pf, int pi)\r
+  {\r
+    pg.translate((int)pf.getImageableX(), (int)pf.getImageableY());\r
+\r
+    int pwidth = (int)pf.getImageableWidth();\r
+    int pheight = (int)pf.getImageableHeight();\r
+    int idWidth = (int)idPanel.idCanvas.getLabelWidth().getWidth();\r
+\r
+    if( seqPanel.seqCanvas.getWidth() < pwidth-idWidth)\r
+      pwidth = seqPanel.seqCanvas.getWidth() + idWidth;\r
+\r
+    pg.setColor(Color.white);\r
+    pg.fillRect(0,0,pwidth, pheight);\r
+    pg.setFont( av.getFont() );\r
+\r
+    ////////////////////////////////////\r
+    /// How many sequences and residues can we fit on a printable page?\r
+    AlignmentI da = av.alignment;\r
+    int endy   = da.getHeight();\r
+    int chunkHeight =  (da.getHeight() + 2)*av.charHeight;\r
+    int chunkWidth  =   (pwidth-idWidth)/av.charWidth;\r
+\r
+    int noChunksOnPage = pheight / chunkHeight;\r
+    int totalChunks = endy / chunkHeight;\r
+\r
+    if ( pi*noChunksOnPage > totalChunks )\r
+     return Printable.NO_SUCH_PAGE;\r
+\r
+    ////////////////\r
+    // Draw the ids\r
+    pg.setClip(0,0,pwidth, noChunksOnPage*chunkHeight);\r
+\r
+    int row = pi*noChunksOnPage;\r
+    pg.setColor(Color.black);\r
+    for(int ypos=2*av.charHeight;\r
+        ypos <= pheight && row*chunkWidth<da.getWidth();\r
+        ypos += chunkHeight, row++ )\r
+    {\r
+      for (int i = 0; i < endy; i++)\r
+      {\r
+        SequenceI s = da.getSequenceAt(i);\r
+        pg.drawString(s.getDisplayId(), 0,\r
+                      AlignmentUtil.getPixelHeight(0, i, av.charHeight) + ypos +\r
+                      av.charHeight - (av.charHeight / 5));\r
+      }\r
+    }\r
+\r
+    // draw main sequence panel\r
+    pg.translate(idWidth,0);\r
+    seqPanel.seqCanvas.drawWrappedPanel(pg, pwidth-idWidth, pheight, pi*noChunksOnPage*chunkWidth);\r
+\r
+\r
+    return Printable.NO_SUCH_PAGE;//.PAGE_EXISTS;\r
+\r
+  }\r
 }\r
 \r
 \r