import java.io.*;\r
import java.awt.image.*;\r
\r
+import org.jibble.epsgraphics.*;\r
+import javax.imageio.*;\r
+\r
\r
public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListener, Printable\r
{\r
this.av = av;\r
seqPanel = new SeqPanel (av, this);\r
idPanel = new IdPanel (av, this);\r
+\r
scalePanel = new ScalePanel(av, this);\r
scorePanel = new ScorePanel(av);\r
ssPanel = new SecondaryStructurePanel(av);\r
\r
secondaryPanelHolder.add(ssPanel, BorderLayout.CENTER);\r
- idPanelHolder.add(idPanel, BorderLayout.CENTER);\r
- idPanel.addNotify();\r
\r
- javax.swing.JFrame f = new javax.swing.JFrame();\r
- f.addNotify();\r
- FontMetrics fm = f.getGraphics().getFontMetrics(av.font);\r
- AlignmentI al = av.getAlignment();\r
+ idPanelHolder.add(idPanel, BorderLayout.CENTER);\r
+ IdwidthAdjuster iap = new IdwidthAdjuster(this);\r
+ idSpaceFillerPanel1.add(iap, BorderLayout.CENTER);\r
\r
- int i = 0;\r
- int idWidth = 0;\r
- while (i < al.getHeight() && al.getSequenceAt(i) != null)\r
- {\r
- SequenceI s = al.getSequenceAt(i);\r
- String str = s.getDisplayId();\r
- if (fm.stringWidth(str) > idWidth)\r
- idWidth = fm.stringWidth(str);\r
- i++;\r
- }\r
- hscrollFillerPanel.setPreferredSize(new Dimension(idWidth, 12));\r
+ Dimension d = calculateIdWidth();\r
+ d.setSize( d.width+4, d.height);\r
+ idPanel.idCanvas.setPreferredSize( d );\r
+ hscrollFillerPanel.setPreferredSize( d );\r
\r
scalePanelHolder.add(scalePanel, BorderLayout.CENTER);\r
scorePanelHolder.add(scorePanel, BorderLayout.CENTER);\r
});\r
}\r
\r
+ Dimension calculateIdWidth()\r
+ {\r
+ Graphics g = this.getGraphics();\r
+ if(g==null)\r
+ {\r
+ javax.swing.JFrame f = new javax.swing.JFrame();\r
+ f.addNotify();\r
+ g = f.getGraphics();\r
+ }\r
+\r
+ FontMetrics fm = g.getFontMetrics(av.font);\r
+ AlignmentI al = av.getAlignment();\r
+\r
+ int i = 0;\r
+ int idWidth = 0;\r
+ String id;\r
+ while (i < al.getHeight() && al.getSequenceAt(i) != null)\r
+ {\r
+ SequenceI s = al.getSequenceAt(i);\r
+ if(av.getShowFullId())\r
+ id = s.getDisplayId();\r
+ else\r
+ id = s.getName();\r
+\r
+ if (fm.stringWidth(id) > idWidth)\r
+ idWidth = fm.stringWidth(id);\r
+ i++;\r
+ }\r
+\r
+ return new Dimension(idWidth, 12);\r
+ }\r
+\r
\r
public void highlightSearchResults(int [] results)\r
{\r
public int printUnwrapped(Graphics pg, int pwidth, int pheight, int pi) throws PrinterException\r
{\r
\r
- int idWidth = (int)idPanel.idCanvas.getLabelWidth().getWidth();\r
+ int idWidth = calculateIdWidth().width;\r
\r
\r
pg.setColor(Color.white);\r
\r
////////////////\r
//draw Scale\r
- pg.translate(idWidth,0);\r
+ pg.translate(30,0);\r
scalePanel.drawScale(pg, startRes, endRes, pwidth-idWidth);\r
\r
- pg.translate(-idWidth, 30);\r
+ pg.translate(-30, 30);\r
////////////////\r
// Draw the ids\r
Color currentColor=null;\r
Color currentTextColor=null;\r
for(int i=startSeq; i<endSeq; i++)\r
{\r
- if (av.alignment.findGroup(av.getAlignment().getSequenceAt(i))==null)\r
+ if (av.getSelectionGroup()!=null && av.getSelectionGroup().sequences.contains(av.getAlignment().getSequenceAt(i)))\r
{\r
currentColor = Color.gray;\r
currentTextColor = Color.black;\r
\r
pg.setColor(currentTextColor);\r
\r
- String string = av.getAlignment().getSequenceAt(i).getDisplayId();\r
+ String string = av.getAlignment().getSequenceAt(i).getName();\r
+ if(av.getShowFullId())\r
+ string = av.getAlignment().getSequenceAt(i).getDisplayId();\r
+\r
pg.drawString(string, 0, jalview.analysis.AlignmentUtil.getPixelHeight\r
(startSeq, i, av.getCharHeight()) + av.getCharHeight() - (av.getCharHeight() / 5));\r
}\r
public int printWrappedAlignment(Graphics pg, int pwidth, int pheight, int pi) throws PrinterException\r
{\r
\r
- int idWidth = (int)idPanel.idCanvas.getLabelWidth().getWidth();\r
+ int idWidth = calculateIdWidth().width;\r
\r
if( seqPanel.seqCanvas.getWidth() < pwidth-idWidth)\r
pwidth = seqPanel.seqCanvas.getWidth() + idWidth;\r
for (int i = 0; i < endy; i++)\r
{\r
SequenceI s = da.getSequenceAt(i);\r
- pg.drawString(s.getDisplayId(), 0,\r
+ String string = s.getName();\r
+ if (av.getShowFullId())\r
+ string = s.getDisplayId();\r
+\r
+ pg.drawString(string, 0,\r
AlignmentUtil.getPixelHeight(0, i, av.charHeight) + ypos +\r
av.charHeight - (av.charHeight / 5));\r
}\r
\r
}\r
\r
- public void makeJPG(int width, int height)\r
+\r
+ public void makeEPS(int width, int height)\r
{\r
try\r
{\r
+ jalview.io.JalviewFileChooser chooser = new jalview.io.JalviewFileChooser(jalview.bin.Cache.getProperty(\r
+ "LAST_DIRECTORY"), new String[]{"eps"}, "Encapsulated Postscript");\r
+ chooser.setFileView(new jalview.io.JalviewFileView());\r
+ chooser.setDialogTitle("Create EPS file from alignment");\r
+ chooser.setToolTipText("Save");\r
\r
- BufferedImage bi = new BufferedImage(width, height,\r
- BufferedImage.TYPE_INT_RGB);\r
- Graphics pg = bi.getGraphics();\r
+ int value = chooser.showSaveDialog(this);\r
+ if (value != jalview.io.JalviewFileChooser.APPROVE_OPTION)\r
+ return;\r
+\r
+ jalview.bin.Cache.setProperty("LAST_DIRECTORY",chooser.getSelectedFile().getPath());\r
+ FileOutputStream out = new FileOutputStream(chooser.getSelectedFile());\r
+ EpsGraphics2D pg = new EpsGraphics2D("Example", out, 0, 0, width, height);\r
\r
- try\r
- {\r
if (av.getWrapAlignment())\r
printWrappedAlignment(pg, width, height, 0);\r
else\r
printUnwrapped(pg, width, height, 0);\r
- }\r
- catch (Exception ex)\r
- {}\r
\r
- javax.swing.JFileChooser chooser = new javax.swing.JFileChooser(jalview.bin.Cache.getProperty(\r
- "LAST_DIRECTORY"));\r
+\r
+ pg.flush();\r
+ pg.close();\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ ex.printStackTrace();\r
+ }\r
+ }\r
+\r
+ public void makePNG(int width, int height)\r
+ {\r
+ try\r
+ {\r
+ jalview.io.JalviewFileChooser chooser = new jalview.io.JalviewFileChooser(jalview.bin.Cache.getProperty(\r
+ "LAST_DIRECTORY"), new String[]{"png"}, "Portable network graphics");\r
chooser.setFileView(new jalview.io.JalviewFileView());\r
- chooser.setDialogTitle("Create JPG image from alignment");\r
+ chooser.setDialogTitle("Create EPS file from alignment");\r
chooser.setToolTipText("Save");\r
\r
int value = chooser.showSaveDialog(this);\r
- if (value == javax.swing.JFileChooser.APPROVE_OPTION)\r
- {\r
+ if (value != jalview.io.JalviewFileChooser.APPROVE_OPTION)\r
+ return;\r
\r
- FileOutputStream out = new FileOutputStream(chooser.getSelectedFile());\r
- JPEGImageEncoder jie = JPEGCodec.createJPEGEncoder(out);\r
- JPEGEncodeParam param = JPEGCodec.getDefaultJPEGEncodeParam(bi);\r
- param.setQuality(1.0f, true);\r
+ jalview.bin.Cache.setProperty("LAST_DIRECTORY",chooser.getSelectedFile().getPath());\r
+ FileOutputStream out = new FileOutputStream(chooser.getSelectedFile());\r
+\r
+ BufferedImage bi = new BufferedImage(width, height, BufferedImage.TYPE_INT_RGB);\r
+ Graphics png = bi.getGraphics();\r
\r
- jie.encode(bi, param);\r
- out.close();\r
- }\r
\r
+ if (av.getWrapAlignment())\r
+ printWrappedAlignment(png, width, height, 0);\r
+ else\r
+ printUnwrapped(png, width, height, 0);\r
+\r
+ ImageIO.write(bi, "png", out);\r
+ out.close();\r
}\r
- catch (IOException ex)\r
+ catch (Exception ex)\r
{\r
- System.out.println("ex Writing image ");\r
+ ex.printStackTrace();\r
}\r
}\r
\r
\r
\r
\r
+\r
git://source.jalview.org / jalview.git / blobdiff