JAL-3253-applet JAL-3383

[jalview.git] / src / jalview / gui / AlignmentPanel.java

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 5fa8fdf..c8f0194 100644 (file)
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -70,7 +70,14 @@ import java.util.List;
 import javax.swing.SwingUtilities;
 
 /**
- * DOCUMENT ME!
+ * The main panel of an AlignFrame, containing holders for the IdPanel,
+ * SeqPanel, AnnotationLabels (a JPanel), and AnnotationPanel.
+ * 
+ * Additional holders contain an IdPanelWidthAdjuster space above the idPanel,
+ * AnnotationScroller (JScrollPane for AnnotationPanel), and vertical and
+ * horizontal scrollbars.
+ * 
+ * 
  * 
  * @author $author$
  * @version $Revision: 1.161 $
@@ -838,6 +845,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
 
       if (overviewPanel != null)
       {
+        getAlignment().resetColors();
         overviewPanel.updateOverviewImage();
       }
     }
@@ -1840,4 +1848,10 @@ public class AlignmentPanel extends GAlignmentPanel implements
     return true;
   }
 
+  @Override
+  public void overviewDone(BufferedImage miniMe)
+  {
+    overviewPanel.canvas.finalizeDraw(miniMe);
+  }
+
 }