import javax.swing.JRadioButton;
import javax.swing.border.TitledBorder;
+import jalview.bin.Console;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.HiddenColumns;
import jalview.io.cache.JvCacheableInputBox;
public AnnotationColumnChooser(AlignViewport av, final AlignmentPanel ap)
{
+ this(av,ap,null);
+ }
+ public AnnotationColumnChooser(AlignViewport av, final AlignmentPanel ap, AlignmentAnnotation selectedAnnotation)
+ {
super(av, ap);
frame = new JInternalFrame();
- frame.setFrameIcon(WindowIcons.annotationIcon);
+ frame.setFrameIcon(null);
frame.setContentPane(this);
frame.setLayer(JLayeredPane.PALETTE_LAYER);
Desktop.addInternalFrame(frame,
}
setOldHiddenColumns(av.getAlignment().getHiddenColumns());
adjusting = true;
-
+
setAnnotations(new JComboBox<>(getAnnotationItems(false)));
populateThresholdComboBox(threshold);
AnnotationColumnChooser lastChooser = av
percentThreshold
.setSelected(lastChooser.percentThreshold.isSelected());
}
+ if (selectedAnnotation!=null)
+ {
+ try {
+ setCurrentAnnotation(selectedAnnotation);
+ annotations.setSelectedItem(getAnnotationMenuLabel(selectedAnnotation));
+ } catch (Exception x)
+ {
+ Console.error("Couldn't select annotation in column chooser",x);
+ }
+ }
try
{
// filterAnnotations, because showing hidden columns has the side effect of
// adding them to the selection
av.showAllHiddenColumns();
- av.getColumnSelection().filterAnnotations(currentAnnotation.annotations,
+ av.getColumnSelection().filterAnnotations(currentAnnotation,
filterParams);
boolean hideCols = getActionOption() == ACTION_OPTION_HIDE;
gSearchPanel.searchBox.updateCache();
ngSearchPanel.searchBox.updateCache();
}
+
+ public static void displayFor(AlignViewport av, AlignmentPanel ap,
+ AlignmentAnnotation alignmentAnnotation)
+ {
+ AnnotationColumnChooser colchooser = new AnnotationColumnChooser(av, ap, alignmentAnnotation);
+ }
}