JAL-3210 Improvements to eclipse detection. New src tree and SwingJS updated from...

[jalview.git] / src / jalview / gui / AnnotationColumnChooser.java

diff --git a/src/jalview/gui/AnnotationColumnChooser.java b/src/jalview/gui/AnnotationColumnChooser.java
index 8dd988e..a1c082c 100644 (file)
--- a/src/jalview/gui/AnnotationColumnChooser.java
+++ b/src/jalview/gui/AnnotationColumnChooser.java
@@ -25,6 +25,7 @@ import jalview.datamodel.HiddenColumns;
 import jalview.io.cache.JvCacheableInputBox;
 import jalview.schemes.AnnotationColourGradient;
 import jalview.util.MessageManager;
+import jalview.util.Platform;
 import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
 
 import java.awt.BorderLayout;
@@ -33,6 +34,8 @@ import java.awt.Color;
 import java.awt.Dimension;
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
+import java.awt.event.FocusAdapter;
+import java.awt.event.FocusEvent;
 import java.awt.event.ItemEvent;
 import java.awt.event.ItemListener;
 import java.awt.event.KeyEvent;
@@ -76,19 +79,18 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
 
   public static final int ACTION_OPTION_SELECT = 1;
 
-  public static int ACTION_OPTION_HIDE = 2;
+  public static final int ACTION_OPTION_HIDE = 2;
 
-  public static String NO_GRAPH_VIEW = "0";
+  public static final String NO_GRAPH_VIEW = "0";
 
-  public static String GRAPH_VIEW = "1";
+  public static final String GRAPH_VIEW = "1";
 
   private int actionOption = ACTION_OPTION_SELECT;
 
   private HiddenColumns oldHiddenColumns;
 
-  protected int MIN_WIDTH = 420;
-
-  protected int MIN_HEIGHT = 430;
+  protected static int MIN_WIDTH = (Platform.isJS() ? 370 : 420);
+  protected static int MIN_HEIGHT = (Platform.isJS() ? 370 : 430);
 
   public AnnotationColumnChooser(AlignViewport av, final AlignmentPanel ap)
   {
@@ -97,8 +99,10 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     frame.setContentPane(this);
     frame.setLayer(JLayeredPane.PALETTE_LAYER);
     Desktop.addInternalFrame(frame,
-            MessageManager.getString("label.select_by_annotation"), 520,
-            215);
+            MessageManager.getString("label.select_by_annotation"), 0,
+            0);
+    // BH note: MIGLayout ignores this completely, 
+    // possibly creating a frame smaller than specified:
     frame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT));
 
     addSliderChangeListener();
@@ -153,7 +157,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
             MessageManager.getString("label.threshold_filter")));
     thresholdPanel.setBackground(Color.white);
     thresholdPanel.setFont(JvSwingUtils.getLabelFont());
-    thresholdPanel.setLayout(new MigLayout("", "[left][right]", "[][]"));
+    thresholdPanel.setLayout(new MigLayout("", "[left][right]", "[][]") );
 
     percentThreshold.setBackground(Color.white);
     percentThreshold.setFont(JvSwingUtils.getLabelFont());
@@ -202,7 +206,6 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
             AnnotationColumnChooser.NO_GRAPH_VIEW);
     switchableViewsPanel.add(graphFilterView,
             AnnotationColumnChooser.GRAPH_VIEW);
-
     this.setLayout(new BorderLayout());
     this.add(annotationComboBoxPanel, java.awt.BorderLayout.PAGE_START);
     this.add(switchableViewsPanel, java.awt.BorderLayout.CENTER);
@@ -243,7 +246,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
         av.getAlignment().setHiddenColumns(oldHidden);
       }
       av.sendSelection();
-      ap.paintAlignment(true);
+      ap.paintAlignment(true, true);
     }
   }
 
@@ -256,7 +259,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
       updateView();
       propagateSeqAssociatedThreshold(updateAllAnnotation,
               getCurrentAnnotation());
-      ap.paintAlignment(false);
+      ap.paintAlignment(false, false);
     }
   }
 
@@ -380,7 +383,8 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     av.getColumnSelection().filterAnnotations(
             getCurrentAnnotation().annotations, filterParams);
 
-    if (getActionOption() == ACTION_OPTION_HIDE)
+    boolean hideCols = getActionOption() == ACTION_OPTION_HIDE;
+    if (hideCols)
     {
       av.hideSelectedColumns();
     }
@@ -388,7 +392,8 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
 
     filterParams = null;
     av.setAnnotationColumnSelectionState(this);
-    ap.paintAlignment(true);
+    // only update overview and structures if columns were hidden
+    ap.paintAlignment(hideCols, hideCols);
   }
 
   public HiddenColumns getOldHiddenColumns()
@@ -492,7 +497,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
 
     CardLayout switchableViewsLayout = (CardLayout) switchableViewsPanel
             .getLayout();
-    switchableViewsLayout.show(switchableViewsPanel, currentView);
+       switchableViewsLayout.show(switchableViewsPanel, currentView);
     updateView();
   }
 
@@ -727,10 +732,9 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
               MessageManager.getString("label.search_filter")));
 
       searchBox.setPrototypeDisplayValue("XXXXXXXXXXXXXXXXXXXXXXX");
-      searchBox.setToolTipText(
+      searchBox.getComponent().setToolTipText(
               MessageManager.getString("info.enter_search_text_here"));
-      searchBox.getEditor().getEditorComponent()
-              .addKeyListener(new java.awt.event.KeyAdapter()
+      searchBox.addKeyListener(new java.awt.event.KeyAdapter()
               {
                 @Override
                 public void keyPressed(KeyEvent e)
@@ -742,6 +746,14 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
                   }
                 }
               });
+      searchBox.addFocusListener(new FocusAdapter()
+      {
+        @Override
+        public void focusLost(FocusEvent e)
+        {
+          searchStringAction();
+        }
+      });
 
       JvSwingUtils.jvInitComponent(displayName, "label.label");
       displayName.addActionListener(new ActionListener()
@@ -759,12 +771,12 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
         @Override
         public void actionPerformed(ActionEvent actionEvent)
         {
-          discriptionCheckboxAction();
+          descriptionCheckboxAction();
         }
       });
 
       syncState();
-      this.add(searchBox);
+      this.add(searchBox.getComponent());
       this.add(displayName);
       this.add(description);
     }
@@ -775,7 +787,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
       aColChooser.updateView();
     }
 
-    public void discriptionCheckboxAction()
+    public void descriptionCheckboxAction()
     {
       aColChooser.setCurrentSearchPanel(this);
       aColChooser.updateView();