package jalview.gui;
-import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
+import jalview.io.cache.JvCacheableInputBox;
import jalview.schemes.AnnotationColourGradient;
import jalview.util.MessageManager;
import jalview.viewmodel.annotationfilter.AnnotationFilterParameter;
import java.awt.BorderLayout;
import java.awt.CardLayout;
import java.awt.Color;
+import java.awt.Dimension;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;
+import java.awt.event.KeyEvent;
import java.util.Iterator;
import javax.swing.ButtonGroup;
import javax.swing.JLayeredPane;
import javax.swing.JPanel;
import javax.swing.JRadioButton;
-import javax.swing.JTextField;
import javax.swing.border.TitledBorder;
-import javax.swing.event.DocumentEvent;
-import javax.swing.event.DocumentListener;
import net.miginfocom.swing.MigLayout;
private int actionOption = ACTION_OPTION_SELECT;
- private ColumnSelection oldColumnSelection;
+ private HiddenColumns oldHiddenColumns;
+
+ protected int MIN_WIDTH = 420;
+
+ protected int MIN_HEIGHT = 430;
public AnnotationColumnChooser(AlignViewport av, final AlignmentPanel ap)
{
Desktop.addInternalFrame(frame,
MessageManager.getString("label.select_by_annotation"), 520,
215);
+ frame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT));
addSliderChangeListener();
addSliderMouseListeners();
{
return;
}
- setOldColumnSelection(av.getColumnSelection());
+ setOldHiddenColumns(av.getAlignment().getHiddenColumns());
adjusting = true;
- setAnnotations(new JComboBox<String>(getAnnotationItems(false)));
+ setAnnotations(new JComboBox<>(getAnnotationItems(false)));
populateThresholdComboBox(threshold);
AnnotationColumnChooser lastChooser = av
.getAnnotationColumnSelectionState();
@Override
protected void reset()
{
- if (this.getOldColumnSelection() != null)
+ if (this.getOldHiddenColumns() != null)
{
av.getColumnSelection().clear();
if (av.getAnnotationColumnSelectionState() != null)
{
- ColumnSelection oldSelection = av
+ HiddenColumns oldHidden = av
.getAnnotationColumnSelectionState()
- .getOldColumnSelection();
- if (oldSelection != null && oldSelection.getHiddenColumns() != null
- && !oldSelection.getHiddenColumns().isEmpty())
+ .getOldHiddenColumns();
+ if (oldHidden != null && oldHidden.getHiddenRegions() != null
+ && !oldHidden.getHiddenRegions().isEmpty())
{
- for (Iterator<int[]> itr = oldSelection.getHiddenColumns()
+ for (Iterator<int[]> itr = oldHidden.getHiddenRegions()
.iterator(); itr.hasNext();)
{
int positions[] = itr.next();
av.hideColumns(positions[0], positions[1]);
}
}
- av.setColumnSelection(oldSelection);
+ av.getAlignment().setHiddenColumns(oldHidden);
}
ap.paintAlignment(true);
}
slider.setMaximum((int) (getCurrentAnnotation().graphMax * 1000));
slider.setValue((int) (getCurrentAnnotation().threshold.value * 1000));
- if (percentThreshold.isSelected())
- {
- thresholdValue
- .setText(""
- + ((getCurrentAnnotation().threshold.value - getCurrentAnnotation().graphMin) * 100f / (getCurrentAnnotation().graphMax - getCurrentAnnotation().graphMin)));
- }
- else
- {
- thresholdValue.setText(getCurrentAnnotation().threshold.value + "");
- }
+ setThresholdValueText();
slider.setMajorTickSpacing((int) (range / 10f));
slider.setEnabled(true);
// build filter params
filterParams
.setThresholdType(AnnotationFilterParameter.ThresholdType.NO_THRESHOLD);
- if (getCurrentAnnotation().graph != AlignmentAnnotation.NO_GRAPH)
+ if (getCurrentAnnotation().isQuantitative())
{
filterParams
.setThresholdValue(getCurrentAnnotation().threshold.value);
if (currentSearchPanel != null)
{
-
- if (!currentSearchPanel.searchBox.getText().isEmpty())
+ if (!currentSearchPanel.searchBox.getUserInput().isEmpty())
{
- currentSearchPanel.description.setEnabled(true);
- currentSearchPanel.displayName.setEnabled(true);
- filterParams.setRegexString(currentSearchPanel.searchBox.getText());
+ filterParams.setRegexString(currentSearchPanel.searchBox
+ .getUserInput());
if (currentSearchPanel.displayName.isSelected())
{
filterParams
.addRegexSearchField(AnnotationFilterParameter.SearchableAnnotationField.DESCRIPTION);
}
}
- else
- {
- currentSearchPanel.description.setEnabled(false);
- currentSearchPanel.displayName.setEnabled(false);
- }
}
+ // show hidden columns here, before changing the column selection in
+ // filterAnnotations, because showing hidden columns has the side effect of
+ // adding them to the selection
+ av.showAllHiddenColumns();
av.getColumnSelection().filterAnnotations(
getCurrentAnnotation().annotations, filterParams);
- av.showAllHiddenColumns();
if (getActionOption() == ACTION_OPTION_HIDE)
{
av.hideSelectedColumns();
}
+ av.sendSelection();
filterParams = null;
av.setAnnotationColumnSelectionState(this);
ap.paintAlignment(true);
}
-
- public ColumnSelection getOldColumnSelection()
+ public HiddenColumns getOldHiddenColumns()
{
- return oldColumnSelection;
+ return oldHiddenColumns;
}
- public void setOldColumnSelection(ColumnSelection currentColumnSelection)
+ public void setOldHiddenColumns(HiddenColumns currentHiddenColumns)
{
- if (currentColumnSelection != null)
+ if (currentHiddenColumns != null)
{
- this.oldColumnSelection = new ColumnSelection(currentColumnSelection);
+ this.oldHiddenColumns = new HiddenColumns(currentHiddenColumns);
}
}
public void selectedAnnotationChanged()
{
String currentView = AnnotationColumnChooser.NO_GRAPH_VIEW;
- if (av.getAlignment().getAlignmentAnnotation()[annmap[getAnnotations()
- .getSelectedIndex()]].graph != AlignmentAnnotation.NO_GRAPH)
+ if (av.getAlignment()
+ .getAlignmentAnnotation()[annmap[getAnnotations()
+ .getSelectedIndex()]].isQuantitative())
{
currentView = AnnotationColumnChooser.GRAPH_VIEW;
}
-
+ saveCache();
gSearchPanel.syncState();
gFurtherActionPanel.syncState();
gStructureFilterPanel.syncState();
private JCheckBox description = new JCheckBox();
- private JTextField searchBox = new JTextField(10);
+ private static final String FILTER_BY_ANN_CACHE_KEY = "CACHE.SELECT_FILTER_BY_ANNOT";
+
+ public JvCacheableInputBox<String> searchBox = new JvCacheableInputBox<String>(
+ FILTER_BY_ANN_CACHE_KEY);
public SearchPanel(AnnotationColumnChooser aColChooser)
{
this.setBorder(new TitledBorder(MessageManager
.getString("label.search_filter")));
- JvSwingUtils.jvInitComponent(searchBox);
+ searchBox.setPrototypeDisplayValue("XXXXXXXXXXXXXXXXXXXXXXX");
searchBox.setToolTipText(MessageManager
.getString("info.enter_search_text_here"));
- searchBox.getDocument().addDocumentListener(new DocumentListener()
- {
- @Override
- public void insertUpdate(DocumentEvent e)
- {
- searchStringAction();
- }
+ searchBox.getEditor().getEditorComponent()
+ .addKeyListener(new java.awt.event.KeyAdapter()
+ {
+ @Override
+ public void keyPressed(KeyEvent e)
+ {
+ if (e.getKeyCode() == KeyEvent.VK_ENTER)
+ {
+ e.consume();
+ searchStringAction();
+ }
+ }
+ });
- @Override
- public void removeUpdate(DocumentEvent e)
- {
- searchStringAction();
- }
- @Override
- public void changedUpdate(DocumentEvent e)
- {
- searchStringAction();
- }
- });
JvSwingUtils.jvInitComponent(displayName, "label.label");
- displayName.setEnabled(false);
displayName.addActionListener(new ActionListener()
{
@Override
});
JvSwingUtils.jvInitComponent(description, "label.description");
- description.setEnabled(false);
description.addActionListener(new ActionListener()
{
@Override
aColChooser.setCurrentSearchPanel(this);
aColChooser.updateView();
updateSearchPanelToolTips();
+ searchBox.updateCache();
}
public void syncState()
displayName.setEnabled(sp.displayName.isEnabled());
displayName.setSelected(sp.displayName.isSelected());
- searchBox.setText(sp.searchBox.getText());
+ searchBox.setSelectedItem(sp.searchBox.getUserInput());
}
updateSearchPanelToolTips();
}
}
}
+ @Override
+ public void ok_actionPerformed()
+ {
+ saveCache();
+ super.ok_actionPerformed();
+ }
+
+ @Override
+ public void cancel_actionPerformed()
+ {
+ saveCache();
+ super.cancel_actionPerformed();
+ }
+
+ private void saveCache()
+ {
+ gSearchPanel.searchBox.persistCache();
+ ngSearchPanel.searchBox.persistCache();
+ gSearchPanel.searchBox.updateCache();
+ ngSearchPanel.searchBox.updateCache();
+ }
}
git://source.jalview.org / jalview.git / blobdiff