JAL-1482 feature renderer and manipulation code refactored to renderer and abstract...

[jalview.git] / src / jalview / gui / AnnotationExporter.java

diff --git a/src/jalview/gui/AnnotationExporter.java b/src/jalview/gui/AnnotationExporter.java
old mode 100755 (executable)
new mode 100644 (file)
index e255cd6..61c5ee1
--- a/src/jalview/gui/AnnotationExporter.java
+++ b/src/jalview/gui/AnnotationExporter.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.gui;
 
@@ -26,6 +29,7 @@ import javax.swing.*;
 
 import jalview.datamodel.*;
 import jalview.io.*;
+import jalview.util.MessageManager;
 
 /**
  * 
@@ -96,7 +100,7 @@ public class AnnotationExporter extends JPanel
     chooser.setFileView(new JalviewFileView());
     chooser.setDialogTitle(features ? "Save Features to File"
             : "Save Annotation to File");
-    chooser.setToolTipText("Save");
+    chooser.setToolTipText(MessageManager.getString("action.save"));
 
     int value = chooser.showSaveDialog(this);
 
@@ -108,14 +112,16 @@ public class AnnotationExporter extends JPanel
         if (GFFFormat.isSelected())
         {
           text = new FeaturesFile().printGFFFormat(ap.av.getAlignment()
-                  .getDataset().getSequencesArray(),
-                  getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());// ap.av.featuresDisplayed//);
+                  .getDataset().getSequencesArray(), ap
+                  .getFeatureRenderer().getDisplayedFeatureCols(), true,
+                  ap.av.isShowNpFeats());// ap.av.featuresDisplayed//);
         }
         else
         {
           text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()
-                  .getDataset().getSequencesArray(),
-                  getDisplayedFeatureCols(), true, ap.av.isShowNpFeats()); // ap.av.featuresDisplayed);
+                  .getDataset().getSequencesArray(), ap
+                  .getFeatureRenderer().getDisplayedFeatureCols(), true,
+                  ap.av.isShowNpFeats()); // ap.av.featuresDisplayed);
         }
       }
       else
@@ -155,14 +161,14 @@ public class AnnotationExporter extends JPanel
       if (GFFFormat.isSelected())
       {
         text = new FeaturesFile().printGFFFormat(ap.av.getAlignment()
-                .getDataset().getSequencesArray(),
-                getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
+                .getDataset().getSequencesArray(), ap.getFeatureRenderer()
+                .getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
       }
       else
       {
         text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()
-                .getDataset().getSequencesArray(),
-                getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
+                .getDataset().getSequencesArray(), ap.getFeatureRenderer()
+                .getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
       }
     }
     else if (!features)
@@ -182,39 +188,27 @@ public class AnnotationExporter extends JPanel
     try
     {
       cap.setText(text);
-      Desktop.addInternalFrame(cap, (features ? "Features for - "
-              : "Annotations for - ") + ap.alignFrame.getTitle(), 600, 500);
+      Desktop.addInternalFrame(
+              cap,
+              (features ? MessageManager.formatMessage(
+                      "label.features_for_params", new String[]
+                      { ap.alignFrame.getTitle() }) : MessageManager
+                      .formatMessage("label.annotations_for_params",
+                              new String[]
+                              { ap.alignFrame.getTitle() })), 600, 500);
     } catch (OutOfMemoryError oom)
     {
-      new OOMWarning("generating "
-              + (features ? "Features for - " : "Annotations for - ")
-              + ap.alignFrame.getTitle(), oom);
+      new OOMWarning((features ? MessageManager.formatMessage(
+              "label.generating_features_for_params", new String[]
+              { ap.alignFrame.getTitle() }) : MessageManager.formatMessage(
+              "label.generating_annotations_for_params", new String[]
+              { ap.alignFrame.getTitle() })), oom);
       cap.dispose();
     }
 
     close_actionPerformed(null);
   }
 
-  private Hashtable getDisplayedFeatureCols()
-  {
-    Hashtable fcols = new Hashtable();
-    if (ap.av.featuresDisplayed == null)
-    {
-      return fcols;
-    }
-    Enumeration en = ap.av.featuresDisplayed.keys();
-    FeatureRenderer fr = ap.seqPanel.seqCanvas.getFeatureRenderer(); // consider
-                                                                     // higher
-                                                                     // level
-                                                                     // method ?
-    while (en.hasMoreElements())
-    {
-      Object col = en.nextElement();
-      fcols.put(col, fr.featureColours.get(col));
-    }
-    return fcols;
-  }
-
   public void close_actionPerformed(ActionEvent e)
   {
     try
@@ -229,7 +223,7 @@ public class AnnotationExporter extends JPanel
   {
     this.setLayout(new BorderLayout());
 
-    toFile.setText("to File");
+    toFile.setText(MessageManager.getString("label.to_file"));
     toFile.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -237,7 +231,7 @@ public class AnnotationExporter extends JPanel
         toFile_actionPerformed(e);
       }
     });
-    toTextbox.setText("to Textbox");
+    toTextbox.setText(MessageManager.getString("label.to_textbox"));
     toTextbox.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -245,7 +239,7 @@ public class AnnotationExporter extends JPanel
         toTextbox_actionPerformed(e);
       }
     });
-    close.setText("Close");
+    close.setText(MessageManager.getString("action.close"));
     close.addActionListener(new ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -259,9 +253,9 @@ public class AnnotationExporter extends JPanel
     GFFFormat.setOpaque(false);
     GFFFormat.setText("GFF");
     CSVFormat.setOpaque(false);
-    CSVFormat.setText("CSV(Spreadsheet)");
+    CSVFormat.setText(MessageManager.getString("label.csv_spreadsheet"));
     jLabel1.setHorizontalAlignment(SwingConstants.TRAILING);
-    jLabel1.setText("Format: ");
+    jLabel1.setText(MessageManager.getString("action.format") + " ");
     this.setBackground(Color.white);
     jPanel3.setBorder(BorderFactory.createEtchedBorder());
     jPanel3.setOpaque(false);