/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
public void exportAnnotations(AlignmentPanel ap)
{
this.ap = ap;
- annotations = ap.av.isShowAnnotation() ? null : ap.av.getAlignment()
- .getAlignmentAnnotation();
+ annotations = ap.av.isShowAnnotation() ? null
+ : ap.av.getAlignment().getAlignmentAnnotation();
wholeView = true;
startExportAnnotation();
}
jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
chooser.setFileView(new JalviewFileView());
- chooser.setDialogTitle(features ? MessageManager
- .getString("label.save_features_to_file") : MessageManager
- .getString("label.save_annotation_to_file"));
+ chooser.setDialogTitle(features
+ ? MessageManager.getString("label.save_features_to_file")
+ : MessageManager.getString("label.save_annotation_to_file"));
chooser.setToolTipText(MessageManager.getString("action.save"));
int value = chooser.showSaveDialog(this);
boolean includeNonPositional = ap.av.isShowNPFeats();
if (GFFFormat.isSelected())
{
- text = new FeaturesFile().printGffFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(), displayedFeatureColours,
- true, ap.av.isShowNPFeats());
+ text = new FeaturesFile().printGffFormat(
+ ap.av.getAlignment().getDataset().getSequencesArray(),
+ displayedFeatureColours, true, ap.av.isShowNPFeats());
text = formatter.printGffFormat(sequences, featureColours, true,
includeNonPositional);
}
else
{
- text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(), displayedFeatureColours,
- true, ap.av.isShowNPFeats()); // ap.av.featuresDisplayed);
- text = formatter.printJalviewFormat(sequences, featureColours,
- true, includeNonPositional);
+ text = new FeaturesFile().printJalviewFormat(
+ ap.av.getAlignment().getDataset().getSequencesArray(),
+ displayedFeatureColours, true, ap.av.isShowNPFeats()); // ap.av.featuresDisplayed);
+ text = formatter.printJalviewFormat(sequences, featureColours, true,
+ includeNonPositional);
}
}
else
{
String text = getFileContents();
cap.setText(text);
- Desktop.addInternalFrame(
- cap,
- (features ? MessageManager.formatMessage(
- "label.features_for_params",
- new String[] { ap.alignFrame.getTitle() })
- : MessageManager.formatMessage(
- "label.annotations_for_params",
- new String[] { ap.alignFrame.getTitle() })),
+ Desktop.addInternalFrame(cap, (features ? MessageManager
+ .formatMessage("label.features_for_params", new String[]
+ { ap.alignFrame.getTitle() })
+ : MessageManager.formatMessage("label.annotations_for_params",
+ new String[]
+ { ap.alignFrame.getTitle() })),
600, 500);
} catch (OutOfMemoryError oom)
{
new OOMWarning((features ? MessageManager.formatMessage(
- "label.generating_features_for_params",
- new String[] { ap.alignFrame.getTitle() })
+ "label.generating_features_for_params", new String[]
+ { ap.alignFrame.getTitle() })
: MessageManager.formatMessage(
"label.generating_annotations_for_params",
- new String[] { ap.alignFrame.getTitle() })), oom);
+ new String[]
+ { ap.alignFrame.getTitle() })),
+ oom);
cap.dispose();
}