*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.gui;
-import java.util.*;
-import java.util.List;
+import jalview.datamodel.AlignmentAnnotation;
+import jalview.datamodel.SequenceGroup;
+import jalview.io.AnnotationFile;
+import jalview.io.FeaturesFile;
+import jalview.io.JalviewFileChooser;
+import jalview.io.JalviewFileView;
+import jalview.util.MessageManager;
-import java.awt.*;
-import java.awt.event.*;
-import javax.swing.*;
+import java.awt.BorderLayout;
+import java.awt.Color;
+import java.awt.FlowLayout;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.Hashtable;
+import java.util.List;
-import jalview.datamodel.*;
-import jalview.io.*;
-import jalview.util.MessageManager;
+import javax.swing.BorderFactory;
+import javax.swing.ButtonGroup;
+import javax.swing.JButton;
+import javax.swing.JInternalFrame;
+import javax.swing.JLabel;
+import javax.swing.JLayeredPane;
+import javax.swing.JPanel;
+import javax.swing.JRadioButton;
+import javax.swing.SwingConstants;
/**
*
this.ap = ap;
features = true;
CSVFormat.setVisible(false);
- frame.setTitle("Export Features");
+ frame.setTitle(MessageManager.getString("label.export_features"));
}
public void exportAnnotations(AlignmentPanel ap,
this.annotations = annotations;
this.sequenceGroups = list;
this.alignmentProperties = alProperties;
- frame.setTitle("Export Annotations");
+ frame.setTitle(MessageManager.getString("label.export_annotations"));
}
public void toFile_actionPerformed(ActionEvent e)
jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
chooser.setFileView(new JalviewFileView());
- chooser.setDialogTitle(features ? "Save Features to File"
- : "Save Annotation to File");
+ chooser.setDialogTitle(features ? MessageManager.getString("label.save_features_to_file")
+ : MessageManager.getString("label.save_annotation_to_file"));
chooser.setToolTipText(MessageManager.getString("action.save"));
int value = chooser.showSaveDialog(this);
if (value == JalviewFileChooser.APPROVE_OPTION)
{
- String text = "No features found on alignment";
+ String text = MessageManager.getString("label.no_features_on_alignment");
if (features)
{
if (GFFFormat.isSelected())
{
text = new FeaturesFile().printGFFFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(),
- getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());// ap.av.featuresDisplayed//);
+ .getDataset().getSequencesArray(), ap
+ .getFeatureRenderer().getDisplayedFeatureCols(), true,
+ ap.av.isShowNpFeats());// ap.av.featuresDisplayed//);
}
else
{
text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(),
- getDisplayedFeatureCols(), true, ap.av.isShowNpFeats()); // ap.av.featuresDisplayed);
+ .getDataset().getSequencesArray(), ap
+ .getFeatureRenderer().getDisplayedFeatureCols(), true,
+ ap.av.isShowNpFeats()); // ap.av.featuresDisplayed);
}
}
else
public void toTextbox_actionPerformed(ActionEvent e)
{
- String text = "No features found on alignment";
+ String text = MessageManager.getString("label.no_features_on_alignment");
if (features)
{
if (GFFFormat.isSelected())
{
text = new FeaturesFile().printGFFFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(),
- getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
+ .getDataset().getSequencesArray(), ap.getFeatureRenderer()
+ .getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
}
else
{
text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(),
- getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
+ .getDataset().getSequencesArray(), ap.getFeatureRenderer()
+ .getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
}
}
else if (!features)
try
{
cap.setText(text);
- Desktop.addInternalFrame(cap, (features ? MessageManager.formatMessage("label.features_for_params", new String[]{ap.alignFrame.getTitle()})
- : MessageManager.formatMessage("label.annotations_for_params", new String[]{ap.alignFrame.getTitle()})), 600, 500);
+ Desktop.addInternalFrame(
+ cap,
+ (features ? MessageManager.formatMessage(
+ "label.features_for_params", new String[]
+ { ap.alignFrame.getTitle() }) : MessageManager
+ .formatMessage("label.annotations_for_params",
+ new String[]
+ { ap.alignFrame.getTitle() })), 600, 500);
} catch (OutOfMemoryError oom)
{
- new OOMWarning((features ? MessageManager.formatMessage("label.generating_features_for_params", new String[]{ap.alignFrame.getTitle()}) : MessageManager.formatMessage("label.generating_annotations_for_params", new String[]{ap.alignFrame.getTitle()}))
- , oom);
+ new OOMWarning((features ? MessageManager.formatMessage(
+ "label.generating_features_for_params", new String[]
+ { ap.alignFrame.getTitle() }) : MessageManager.formatMessage(
+ "label.generating_annotations_for_params", new String[]
+ { ap.alignFrame.getTitle() })), oom);
cap.dispose();
}
close_actionPerformed(null);
}
-
- private Hashtable getDisplayedFeatureCols()
- {
- Hashtable fcols = new Hashtable();
- if (ap.av.featuresDisplayed == null)
- {
- return fcols;
- }
- Enumeration en = ap.av.featuresDisplayed.keys();
- FeatureRenderer fr = ap.seqPanel.seqCanvas.getFeatureRenderer(); // consider
- // higher
- // level
- // method ?
- while (en.hasMoreElements())
- {
- Object col = en.nextElement();
- fcols.put(col, fr.featureColours.get(col));
- }
- return fcols;
- }
-
public void close_actionPerformed(ActionEvent e)
{
try