import java.awt.FlowLayout;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
-import java.util.Enumeration;
import java.util.Hashtable;
import java.util.List;
if (GFFFormat.isSelected())
{
text = new FeaturesFile().printGFFFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(),
- getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());// ap.av.featuresDisplayed//);
+ .getDataset().getSequencesArray(), ap
+ .getFeatureRenderer().getDisplayedFeatureCols(), true,
+ ap.av.isShowNpFeats());// ap.av.featuresDisplayed//);
}
else
{
text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(),
- getDisplayedFeatureCols(), true, ap.av.isShowNpFeats()); // ap.av.featuresDisplayed);
+ .getDataset().getSequencesArray(), ap
+ .getFeatureRenderer().getDisplayedFeatureCols(), true,
+ ap.av.isShowNpFeats()); // ap.av.featuresDisplayed);
}
}
else
if (GFFFormat.isSelected())
{
text = new FeaturesFile().printGFFFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(),
- getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
+ .getDataset().getSequencesArray(), ap.getFeatureRenderer()
+ .getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
}
else
{
text = new FeaturesFile().printJalviewFormat(ap.av.getAlignment()
- .getDataset().getSequencesArray(),
- getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
+ .getDataset().getSequencesArray(), ap.getFeatureRenderer()
+ .getDisplayedFeatureCols(), true, ap.av.isShowNpFeats());
}
}
else if (!features)
close_actionPerformed(null);
}
-
- private Hashtable getDisplayedFeatureCols()
- {
- Hashtable fcols = new Hashtable();
- if (ap.av.getFeaturesDisplayed() == null)
- {
- return fcols;
- }
-
- Enumeration en = ap.av.getFeaturesDisplayed().keys();
- FeatureRenderer fr = ap.getSeqPanel().seqCanvas.getFeatureRenderer(); // consider
- // higher
- // level
- // method ?
- while (en.hasMoreElements())
- {
- Object col = en.nextElement();
- fcols.put(col, fr.featureColours.get(col));
- }
- return fcols;
- }
-
public void close_actionPerformed(ActionEvent e)
{
try