maintain original threshold value

[jalview.git] / src / jalview / gui / AnnotationLabels.java

diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index 9c12b89..26cba7a 100755 (executable)
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -84,7 +84,7 @@ public class AnnotationLabels extends JPanel implements MouseListener, MouseMoti
    }\r
 \r
    ap.annotationPanel.adjustPanelHeight();\r
-   ap.RefreshPanels();\r
+   ap.repaint();\r
 \r
   }\r
 \r
@@ -156,7 +156,7 @@ public class AnnotationLabels extends JPanel implements MouseListener, MouseMoti
       ap.annotationScroller.setPreferredSize(new Dimension(d.width,d.height - dif));\r
       d = ap.annotationSpaceFillerHolder.getPreferredSize();\r
       ap.annotationSpaceFillerHolder.setPreferredSize(new Dimension(d.width,d.height - dif));\r
-      ap.RefreshPanels();\r
+      ap.repaint();\r
     }\r
     ap.addNotify();\r
   }\r
@@ -193,9 +193,15 @@ public class AnnotationLabels extends JPanel implements MouseListener, MouseMoti
 \r
      x = getWidth() - fm.stringWidth(aa[i].label)-3;\r
 \r
+     if(aa[i].isGraph)\r
+       y+=(aa[i].height/3);\r
+\r
      g.drawString(aa[i].label, x, y);\r
 \r
-     y+=aa[i].height;\r
+     if(aa[i].isGraph)\r
+       y+=(2*aa[i].height/3);\r
+    else\r
+       y+=aa[i].height;\r
    }\r
 \r
    if (active)\r