command line hook for questionnaire url argument.

[jalview.git] / src / jalview / gui / AnnotationLabels.java

diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index 4d73aa6..783c905 100755 (executable)
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -40,6 +40,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
     MouseMotionListener, ActionListener
 {
     static String ADDNEW = "Add New Row";
+    static String EDITNAME="Edit Label/Description";
     static String HIDE = "Hide This Row";
     static String DELETE = "Delete This Row";
     static String SHOWALL = "Show All Hidden Rows";
@@ -66,6 +67,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
     {
         this.ap = ap;
         av = ap.av;
+        ToolTipManager.sharedInstance().registerComponent(this);
 
         java.net.URL url = getClass().getResource("/images/idwidth.gif");
         Image temp = null;
@@ -150,23 +152,23 @@ public class AnnotationLabels extends JPanel implements MouseListener,
 
         if (evt.getActionCommand().equals(ADDNEW))
         {
-            String label = JOptionPane.showInputDialog(this,
-                    "Label for annotation");
-
-            if (label == null)
-            {
-                label = "";
-            }
-
-            AlignmentAnnotation newAnnotation = new AlignmentAnnotation(label,
-                    "New description",
+            AlignmentAnnotation newAnnotation = new AlignmentAnnotation(null,
+                    null,
                     new Annotation[ap.av.alignment.getWidth()]);
 
+            if(!editLabelDescription(newAnnotation))
+              return;
+
             ap.av.alignment.addAnnotation(newAnnotation);
             ap.av.alignment.setAnnotationIndex(newAnnotation, 0);
             if (aa != null)
               dif = aa[aa.length - 1].height;
         }
+        else if(evt.getActionCommand().equals(EDITNAME))
+        {
+          editLabelDescription(aa[selectedRow]);
+          repaint();
+        }
         else if (evt.getActionCommand().equals(HIDE))
         {
             aa[selectedRow].visible = false;
@@ -199,7 +201,8 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           new AnnotationExporter().exportAnnotations(
               ap,
               new AlignmentAnnotation[]
-              {aa[selectedRow]}
+              {aa[selectedRow]},
+              null
               );
         }
         else if (evt.getActionCommand().equals(COPYCONS_SEQ))
@@ -215,6 +218,35 @@ public class AnnotationLabels extends JPanel implements MouseListener,
         ap.repaint();
     }
 
+
+    /**
+     * DOCUMENT ME!
+     *
+     * @param e DOCUMENT ME!
+     */
+    boolean editLabelDescription(AlignmentAnnotation annotation)
+    {
+      EditNameDialog dialog = new EditNameDialog(annotation.label,
+                                                 annotation.description,
+                                                 "       Annotation Name ",
+                                                 "Annotation Description ",
+                                                 "Edit Annotation Name/Description");
+
+      if (!dialog.accept)
+      {
+        return false;
+      }
+
+        annotation.label = dialog.getName();
+
+        String text = dialog.getDescription();
+        if(text.length()==0)
+          text = null;
+        annotation.description = text;
+
+        return true;
+    }
+
     /**
      * DOCUMENT ME!
      *
@@ -324,6 +356,19 @@ public class AnnotationLabels extends JPanel implements MouseListener,
     {
       resizePanel = evt.getY()<10;
 
+      getSelectedRow(evt.getY() - scrollOffset);
+
+      if(selectedRow>-1
+         && ap.av.alignment.getAlignmentAnnotation().length>selectedRow)
+      {
+        String desc = ap.av.alignment.
+            getAlignmentAnnotation()[selectedRow].description;
+
+        if (desc != null && !desc.equals("New description"))
+          setToolTipText(ap.av.alignment.
+                         getAlignmentAnnotation()[selectedRow].description);
+
+      }
       repaint();
     }
 
@@ -355,6 +400,9 @@ public class AnnotationLabels extends JPanel implements MouseListener,
         JMenuItem item = new JMenuItem(ADDNEW);
         item.addActionListener(this);
         pop.add(item);
+        item = new JMenuItem(EDITNAME);
+        item.addActionListener(this);
+        pop.add(item);
         item = new JMenuItem(HIDE);
         item.addActionListener(this);
         pop.add(item);
@@ -368,7 +416,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
         item.addActionListener(this);
         pop.add(item);
         // annotation object should be typed
-        if (aa[selectedRow].label.equals("Consensus"))
+        if (aa[selectedRow]==ap.av.consensus)
         {
           pop.addSeparator();
           final JCheckBoxMenuItem cbmi = new JCheckBoxMenuItem(