*/
package jalview.gui;
+import java.awt.Canvas;
import java.awt.Color;
import java.awt.Cursor;
import java.awt.Dimension;
/**
* height in pixels for allowing height adjuster to be active
*/
- private static int HEIGHT_ADJUSTER_HEIGHT = 10;
+ public static int HEIGHT_ADJUSTER_HEIGHT = 10;
private static final Font font = new Font("Arial", Font.PLAIN, 11);
private boolean resizePanel = false;
+ private int annotationIdWidth = -1;
+
+ public static final String RESIZE_MARGINS_MARK_PREF = "RESIZE_MARGINS_MARK";
+
/**
* Creates a new AnnotationLabels object
*
public void actionPerformed(ActionEvent e)
{
sel_row.setShowGroupsForContactMatrix(chitem.getState());
- ap.getAnnotationPanel()
- .paint(ap.getAnnotationPanel().getGraphics());
+ // so any annotation colour changes are propagated - though they
+ // probably won't be unless the annotation row colours are removed
+ // too!
+ ap.alignmentChanged();
}
});
pop.add(chitem);
"action.clustering_matrix_for",
cm.getAnnotDescr(), 5f),
progBar = System.currentTimeMillis());
- cm.setGroupSet(GroupSet.makeGroups(cm, 5f, true));
+ cm.setGroupSet(GroupSet.makeGroups(cm, true));
+ cm.randomlyReColourGroups();
+ cm.transferGroupColorsTo(alignmentAnnotation);
+ ap.alignmentChanged();
ap.alignFrame.showContactMapTree(alignmentAnnotation, cm);
ap.alignFrame.setProgressBar(null, progBar);
}
{
Dimension d = ap.annotationScroller.getPreferredSize();
int dif = evt.getY() - oldY;
+ dif -= dif % ap.av.getCharHeight();
- dif /= ap.av.getCharHeight();
- dif *= ap.av.getCharHeight();
+ // don't allow setting an annotation panel height larger than visible
+ // (otherwise you can't get back)
+ if (d.height - dif > ap.idPanelHolder.getHeight()
+ - ap.getIdSpaceFillerPanel1().getHeight())
+ {
+ return;
+ }
if ((d.height - dif) > 20)
{
if (av.hasHiddenColumns())
{
Iterator<int[]> it = av.getAlignment().getHiddenColumns()
- .getVisContigsIterator(0, sq.getLength(), false);
+ .getVisContigsIterator(0, sq.getLength() + 1, false);
omitHidden = new String[] { sq.getSequenceStringFromIterator(it) };
}
RenderingHints.VALUE_ANTIALIAS_ON);
}
- drawComponent(g2, true, width);
-
+ drawComponent(g2, true, width, true);
}
/**
*/
public void drawComponent(Graphics g, int width)
{
- drawComponent(g, false, width);
+ drawComponent(g, false, width, true);
}
/**
* @param width
* Width for scaling labels
*/
- public void drawComponent(Graphics g, boolean clip, int givenWidth)
+ public void drawComponent(Graphics g, boolean clip, int givenWidth,
+ boolean forGUI)
{
int width = givenWidth;
- IdwidthAdjuster iwa = ap.idwidthAdjuster;
- if ((Cache.getDefault(ADJUST_ANNOTATION_LABELS_WIDTH_PREF, true)
- || Jalview.isHeadlessMode()))
+ IdwidthAdjuster iwa = null;
+ if (ap != null)
{
- Graphics2D g2d = (Graphics2D) g;
- Graphics dummy = g2d.create();
- int annotationIdWidth = drawLabels(dummy, clip, width, false);
- Dimension d = ap.calculateDefaultAlignmentIdWidth();
- int alignmentIdWidth = d.width;
- if (!iwa.manuallyAdjusted())
- {
- // If no manual adjustment to ID column with has been made then adjust
- // width match widest of alignment or annotation id widths
- width = Math.max(alignmentIdWidth, annotationIdWidth);
- }
- else if (annotationIdWidth > givenWidth
- && annotationIdWidth > alignmentIdWidth)
- {
- // otherwise if the annotation id width has become larger than the
- // current id width, increase
- width = annotationIdWidth;
- }
- // set the width if it's changed
- if (width != ap.av.getIdWidth())
+ iwa = ap.idwidthAdjuster;
+ if (Cache.getDefault(ADJUST_ANNOTATION_LABELS_WIDTH_PREF, true)
+ || Jalview.isHeadlessMode())
{
- iwa.setWidth(width);
- ap.validateAnnotationDimensions(false);
+ Graphics2D g2d = (Graphics2D) g;
+ Graphics dummy = g2d.create();
+ int newAnnotationIdWidth = drawLabels(dummy, clip, width, false,
+ forGUI, null, false);
+ dummy.dispose();
+ Dimension d = ap.calculateDefaultAlignmentIdWidth();
+ int alignmentIdWidth = d.width;
+ if (iwa != null && !iwa.manuallyAdjusted())
+ {
+ // If no manual adjustment to ID column with has been made then adjust
+ // width match widest of alignment or annotation id widths
+ boolean allowShrink = Cache.getDefault("ALLOW_SHRINK_ID_WIDTH",
+ false);
+ width = Math.max(alignmentIdWidth, newAnnotationIdWidth);
+ if (clip && width < givenWidth && !allowShrink)
+ {
+ width = givenWidth;
+ }
+ }
+ else if (newAnnotationIdWidth != annotationIdWidth
+ && newAnnotationIdWidth > givenWidth
+ && newAnnotationIdWidth > alignmentIdWidth)
+ {
+ // otherwise if the annotation id width has become larger than the
+ // current id width, increase
+ width = newAnnotationIdWidth;
+ annotationIdWidth = newAnnotationIdWidth;
+ }
+ // set the width if it's changed
+ if (width != ap.av.getIdWidth())
+ {
+ iwa.setWidth(width);
+ }
}
}
- drawLabels(g, clip, width, true);
+ else
+ {
+ int newAnnotationIdWidth = drawLabels(g, clip, width, false, forGUI,
+ null, false);
+ width = newAnnotationIdWidth < givenWidth ? givenWidth
+ : Math.min(newAnnotationIdWidth, givenWidth);
+ }
+ drawLabels(g, clip, width, true, forGUI, null, false);
}
/**
* Render the full set of annotation Labels for the alignment at the given
- * cursor. If actuallyDraw is false then no actual drawing will occur, but the
- * widest label width will be returned.
+ * cursor. If actuallyDraw is false or g is null then no actual drawing will
+ * occur, but the widest label width will be returned. If g is null then
+ * fmetrics must be supplied.
*
* @param g
- * Graphics2D instance (needed for font scaling)
+ * Graphics2D instance (used for rendering and font scaling if no
+ * fmetrics supplied)
* @param clip
* - true indicates that only current visible area needs to be
* rendered
* @param width
* Width for scaling labels
+ * @param actuallyDraw
+ * - when false, no graphics are rendered to g0
+ * @param forGUI
+ * - when false, GUI relevant marks like indicators for dragging
+ * annotation panel height are not rendered
+ * @param fmetrics
+ * FontMetrics if Graphics object g is null
+ * @param includeHidden
+ * - when true returned width includes labels in hidden row width
+ * calculation
+ * @return the width of the annotation labels.
*/
- public int drawLabels(Graphics g, boolean clip, int width,
- boolean actuallyDraw)
+ public int drawLabels(Graphics g0, boolean clip, int width,
+ boolean actuallyDraw, boolean forGUI, FontMetrics fmetrics,
+ boolean includeHidden)
{
- int actualWidth = 0;
- if (av.getFont().getSize() < 10)
+ if (clip)
{
- g.setFont(font);
+ clip = Cache.getDefault("MOVE_SEQUENCE_ID_WITH_VISIBLE_ANNOTATIONS",
+ true);
}
- else
+ Graphics g = null;
+ // create a dummy Graphics object if not drawing and one is supplied
+ if (g0 != null)
+ {
+ if (!actuallyDraw)
+ {
+ Graphics2D g2d = (Graphics2D) g0;
+ g = g2d.create();
+ }
+ else
+ {
+ g = g0;
+ }
+ }
+ int actualWidth = 0;
+ if (g != null)
{
- g.setFont(av.getFont());
+ if (av.getFont().getSize() < 10)
+ {
+ g.setFont(font);
+ }
+ else
+ {
+ g.setFont(av.getFont());
+ }
}
- FontMetrics fm = g.getFontMetrics(g.getFont());
+ FontMetrics fm = fmetrics == null ? g.getFontMetrics(g.getFont())
+ : fmetrics;
if (actuallyDraw)
{
g.setColor(Color.white);
g.fillRect(0, 0, getWidth(), getHeight());
+
+ if (!Cache.getDefault(RESIZE_MARGINS_MARK_PREF, false)
+ && !av.getWrapAlignment() && forGUI)
+ {
+ g.setColor(Color.LIGHT_GRAY);
+ g.drawLine(0, HEIGHT_ADJUSTER_HEIGHT / 4, HEIGHT_ADJUSTER_WIDTH / 4,
+ HEIGHT_ADJUSTER_HEIGHT / 4);
+ g.drawLine(0, 3 * HEIGHT_ADJUSTER_HEIGHT / 4,
+ HEIGHT_ADJUSTER_WIDTH / 4, 3 * HEIGHT_ADJUSTER_HEIGHT / 4);
+
+ }
}
if (actuallyDraw)
SequenceI lastSeqRef = null;
String lastLabel = null;
AlignmentAnnotation[] aa = av.getAlignment().getAlignmentAnnotation();
- int fontHeight = g.getFont().getSize();
+ int fontHeight = g != null ? g.getFont().getSize()
+ : fm.getFont().getSize();
int y = 0;
int x = 0;
int graphExtras = 0;
int offset = 0;
- Font baseFont = g.getFont();
+ Font baseFont = g != null ? g.getFont() : fm.getFont();
FontMetrics baseMetrics = fm;
int ofontH = fontHeight;
int sOffset = 0;
for (int i = 0; i < aa.length; i++)
{
visible = true;
- if (!aa[i].visible)
+ if (!aa[i].visible && !includeHidden)
{
hasHiddenRows = true;
continue;
olY = y;
// look ahead to next annotation
for (nexAA = i + 1; nexAA < aa.length
- && !aa[nexAA].visible; nexAA++)
+ && (!aa[nexAA].visible && includeHidden); nexAA++)
;
y += aa[i].height;
if (clip)
{
if (debugRedraw)
{
- System.out.println("before vis: " + i);
+ jalview.bin.Console.outPrintln("before vis: " + i);
}
before = true;
}
{
if (debugRedraw)
{
- System.out.println(
+ jalview.bin.Console.outPrintln(
"Scroll offset: " + sOffset + " after vis: " + i);
}
after = true;
continue;
}
}
- if (actuallyDraw)
+ if (actuallyDraw && g != null)
{
g.setColor(Color.black);
}
s = ((float) fontHeight) / (float) ofontH;
Font f = baseFont
.deriveFont(AffineTransform.getScaleInstance(s, s));
- g.setFont(f);
- fm = g.getFontMetrics();
- graphExtras = (aa[i].height - (groupSize * (fontHeight + 8)))
- / 2;
+ Canvas c = new Canvas();
+ fm = c.getFontMetrics(f);
+ if (actuallyDraw && g != null)
+ {
+ g.setFont(f);
+ // fm = g.getFontMetrics();
+ graphExtras = (aa[i].height
+ - (groupSize * (fontHeight + 8))) / 2;
+ }
}
}
if (visible)
{
labelWidth = fm.stringWidth(aa[gg].label) + 3;
x = width - labelWidth;
- if (actuallyDraw)
+ if (actuallyDraw && g != null)
{
g.drawString(aa[gg].label, x, y - graphExtras);
}
}
}
- g.setFont(baseFont);
+ if (actuallyDraw && g != null)
+ {
+ g.setFont(baseFont);
+ }
fm = baseMetrics;
fontHeight = ofontH;
}
else
{
- if (actuallyDraw)
+ if (actuallyDraw && g != null)
{
if (vertBar)
{
}
}
- if (!resizePanel && dragEvent != null && aa != null)
+ if (!resizePanel && dragEvent != null && aa != null && selectedRow > -1
+ && selectedRow < aa.length)
{
- if (actuallyDraw)
+ if (actuallyDraw && g != null)
{
g.setColor(Color.lightGray);
g.drawString(
if (!av.getWrapAlignment() && ((aa == null) || (aa.length < 1)))
{
- if (actuallyDraw)
+ if (actuallyDraw && g != null)
{
g.drawString(MessageManager.getString("label.right_click"), 2, 8);
g.drawString(MessageManager.getString("label.to_add_annotation"), 2,
public void mouseEntered(MouseEvent e)
{
}
+
+ public void drawComponentNotGUI(Graphics idGraphics, int idWidth)
+ {
+ drawComponent(idGraphics, false, idWidth, false);
+ }
}
git://source.jalview.org / jalview.git / blobdiff