if (!ann.groupRef.isUseInfoLetterHeight())
{
ann.groupRef.setIgnoreBelowBackground(cbmi.getState());
+ // todo and recompute group annotation
}
}
else if (!ap.av.isInfoLetterHeight())
{
ap.av.setIgnoreBelowBackground(cbmi.getState(), ap);
+ // todo and recompute annotation
}
- ap.alignmentChanged();
+ ap.alignmentChanged(); // todo not like this
}
});
pop.add(cbmi);
{
ann.groupRef.setInfoLetterHeight((letterHeight.getState()));
ann.groupRef.setIgnoreBelowBackground(true);
+ // todo and recompute group annotation
}
else
{
ap.av.setInfoLetterHeight(letterHeight.getState(), ap);
ap.av.setIgnoreBelowBackground(true, ap);
+ // todo and recompute annotation
}
ap.alignmentChanged();
}
@Override
public void actionPerformed(ActionEvent e)
{
- ann.groupRef.setshowHMMSequenceLogo(cprofl.getState());
+ ann.groupRef.setShowHMMSequenceLogo(cprofl.getState());
ap.repaint();
}
});
ann.groupRef
.setNormaliseHMMSequenceLogo(cproflnorm.getState());
// automatically enable logo display if we're clicked
- ann.groupRef.setshowHMMSequenceLogo(true);
+ ann.groupRef.setShowHMMSequenceLogo(true);
ap.repaint();
}
});