/*
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
* Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- *
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
+ * modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
+ *
* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
*/
package jalview.gui;
import java.awt.*;
import java.awt.event.*;
import java.awt.image.*;
-import java.util.Hashtable;
-
import javax.swing.*;
-import jalview.analysis.AAFrequency;
-import jalview.analysis.StructureFrequency;
import jalview.datamodel.*;
import jalview.renderer.AnnotationRenderer;
import jalview.renderer.AwtRenderPanelI;
/**
* DOCUMENT ME!
- *
+ *
* @author $author$
* @version $Revision$
*/
/**
* Creates a new AnnotationPanel object.
- *
+ *
* @param ap
* DOCUMENT ME!
*/
/**
* DOCUMENT ME!
- *
+ *
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void adjustmentValueChanged(AdjustmentEvent evt)
{
ap.alabels.setScrollOffset(-evt.getValue());
* Calculates the height of the annotation displayed in the annotation panel.
* Callers should normally call the ap.adjustAnnotationHeight method to ensure
* all annotation associated components are updated correctly.
- *
+ *
*/
public int adjustPanelHeight()
{
/**
* calculate the height for visible annotation, revalidating bounds where
* necessary ABSTRACT GUI METHOD
- *
+ *
* @return total height of annotation
*/
public int calcPanelHeight()
/**
* DOCUMENT ME!
- *
+ *
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void actionPerformed(ActionEvent evt)
{
AlignmentAnnotation[] aa = av.getAlignment().getAlignmentAnnotation();
/**
* DOCUMENT ME!
- *
+ *
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mousePressed(MouseEvent evt)
{
/**
* DOCUMENT ME!
- *
+ *
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mouseReleased(MouseEvent evt)
{
graphStretch = -1;
/**
* DOCUMENT ME!
- *
+ *
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mouseEntered(MouseEvent evt)
{
ap.scalePanel.mouseEntered(evt);
/**
* DOCUMENT ME!
- *
+ *
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mouseExited(MouseEvent evt)
{
ap.scalePanel.mouseExited(evt);
/**
* DOCUMENT ME!
- *
+ *
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mouseDragged(MouseEvent evt)
{
if (graphStretch > -1)
/**
* DOCUMENT ME!
- *
+ *
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mouseMoved(MouseEvent evt)
{
AlignmentAnnotation[] aa = av.getAlignment().getAlignmentAnnotation();
}
if (row > -1 && aa[row].annotations != null
- && res < (int) aa[row].annotations.length)
+ && res < aa[row].annotations.length)
{
if (aa[row].graphGroup > -1)
{
/**
* DOCUMENT ME!
- *
+ *
* @param evt
* DOCUMENT ME!
*/
+ @Override
public void mouseClicked(MouseEvent evt)
{
if (activeRow != -1)
/**
* DOCUMENT ME!
- *
+ *
* @param g
* DOCUMENT ME!
*/
+ @Override
public void paintComponent(Graphics g)
{
g.setColor(Color.white);
/**
* non-Thread safe repaint
- *
+ *
* @param horizontal
* repaint with horizontal shift in alignment
*/
/**
* DOCUMENT ME!
- *
+ *
* @param g
* DOCUMENT ME!
* @param startRes