JAL-2759 Rename findColumnPosition and adjustForHiddenColumns (yay!)

[jalview.git] / src / jalview / gui / AnnotationPanel.java

diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index be8f5f6..f8e8a78 100755 (executable)
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -670,7 +670,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
       }
       graphStretchY = evt.getY();
       adjustPanelHeight();
-      ap.paintAlignment(true);
+      ap.paintAlignment(false, false);
     }
     else
     {
@@ -724,7 +724,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
     if (av.hasHiddenColumns())
     {
       column = av.getAlignment().getHiddenColumns()
-              .adjustForHiddenColumns(column);
+              .visibleToAbsoluteColumn(column);
     }
 
     AlignmentAnnotation ann = aa[row];
@@ -1185,5 +1185,14 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
     {
       fastPaint((int) evt.getNewValue() - (int) evt.getOldValue());
     }
+    else if (evt.getPropertyName().equals(ViewportRanges.STARTRESANDSEQ))
+    {
+      fastPaint(((int[]) evt.getNewValue())[0]
+              - ((int[]) evt.getOldValue())[0]);
+    }
+    else if (evt.getPropertyName().equals(ViewportRanges.MOVE_VIEWPORT))
+    {
+      repaint();
+    }
   }
 }