*/
private Map<AlignmentAnnotation, String> annotationLabels;
- private boolean enableSeqAss = false;
-
private AlignmentAnnotation currentAnnotation;
/**
* Constructor
*
- * @param av
- * @param ap
+ * @param viewport
+ * @param alignPanel
*/
- public AnnotationRowFilter(AlignViewport av, final AlignmentPanel ap)
+ public AnnotationRowFilter(AlignViewport viewport, final AlignmentPanel alignPanel)
{
- this.av = av;
- this.ap = ap;
+ this.av = viewport;
+ this.ap = alignPanel;
thresholdValue.addFocusListener(new FocusAdapter()
{
@Override
});
}
- /**
- * Builds and returns a list of menu items (display text) for choice of
- * annotation. Also builds maps between annotations, their positions in the
- * list, and their display labels in the list.
- *
- * @param isSeqAssociated
- * @return
- */
+/**
+ * Builds and returns a list of menu items (display text) for choice of
+ * annotation. Also builds maps between annotations, their positions in the
+ * list, and their display labels in the list.
+ *
+ * @param isSeqAssociated
+ * @return
+ */
public Vector<String> getAnnotationItems(boolean isSeqAssociated)
{
annotationLabels = new HashMap<AlignmentAnnotation, String>();
Vector<String> list = new Vector<String>();
int index = 1;
int[] anmap = new int[av.getAlignment().getAlignmentAnnotation().length];
+ seqAssociated.setEnabled(false);
for (int i = 0; i < av.getAlignment().getAlignmentAnnotation().length; i++)
{
AlignmentAnnotation annotation = av.getAlignment()
}
else
{
- enableSeqAss = true;
+ seqAssociated.setEnabled(true);
}
String label = annotation.label;
// add associated sequence ID if available
return selectedThresholdItem;
}
- public void modelChanged()
- {
- seqAssociated.setEnabled(enableSeqAss);
- }
-
public void ok_actionPerformed()
{
try
{
adjusting = true;
String cursel = (String) anns.getSelectedItem();
- boolean isvalid = false, isseqs = seqAssociated.isSelected();
+ boolean isvalid = false;
+ boolean isseqs = seqAssociated.isSelected();
anns.removeAllItems();
for (String anitem : getAnnotationItems(seqAssociated.isSelected()))
{
}
anns.addItem(anitem);
}
- adjusting = false;
if (isvalid)
{
anns.setSelectedItem(cursel);
anns.setSelectedIndex(0);
}
}
+ adjusting = false;
+
+ updateView();
}
protected void propagateSeqAssociatedThreshold(boolean allAnnotation,
}
}
- protected AlignmentAnnotation getCurrentAnnotation()
+ public AlignmentAnnotation getCurrentAnnotation()
{
return currentAnnotation;
}
- protected void setCurrentAnnotation(AlignmentAnnotation currentAnnotation)
+ protected void setCurrentAnnotation(AlignmentAnnotation annotation)
{
- this.currentAnnotation = currentAnnotation;
+ this.currentAnnotation = annotation;
}
protected abstract void valueChanged(boolean updateAllAnnotation);