Merge branch 'features/JAL-1605_html-svg-export' into develop

[jalview.git] / src / jalview / gui / AppJmol.java

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index 5cc174a..09b0fdd 100644 (file)
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -315,9 +315,9 @@ public class AppJmol extends GStructureViewer implements Runnable,
         // TODO : Fix multiple seq to one chain issue here.
         ap.getStructureSelectionManager().setMapping(seq, chains,
                 alreadyMapped, AppletFormatAdapter.FILE);
-        if (ap.seqPanel.seqCanvas.fr != null)
+        if (ap.getSeqPanel().seqCanvas.fr != null)
         {
-          ap.seqPanel.seqCanvas.fr.featuresAdded();
+          ap.getSeqPanel().seqCanvas.fr.featuresAdded();
           ap.paintAlignment(true);
         }
 
@@ -998,33 +998,42 @@ public class AppJmol extends GStructureViewer implements Runnable,
   @Override
   public void eps_actionPerformed(ActionEvent e)
   {
-    makePDBImage(jalview.util.ImageMaker.EPS);
+    makePDBImage(jalview.util.ImageMaker.TYPE.EPS);
   }
 
   @Override
   public void png_actionPerformed(ActionEvent e)
   {
-    makePDBImage(jalview.util.ImageMaker.PNG);
+    makePDBImage(jalview.util.ImageMaker.TYPE.PNG);
   }
 
-  void makePDBImage(int type)
+  void makePDBImage(jalview.util.ImageMaker.TYPE type)
   {
     int width = getWidth();
     int height = getHeight();
 
     jalview.util.ImageMaker im;
 
-    if (type == jalview.util.ImageMaker.PNG)
+    if (type == jalview.util.ImageMaker.TYPE.PNG)
     {
-      im = new jalview.util.ImageMaker(this, jalview.util.ImageMaker.PNG,
+      im = new jalview.util.ImageMaker(this,
+              jalview.util.ImageMaker.TYPE.PNG,
               "Make PNG image from view", width, height, null, null);
     }
-    else
+    else if (type == jalview.util.ImageMaker.TYPE.EPS)
     {
-      im = new jalview.util.ImageMaker(this, jalview.util.ImageMaker.EPS,
+      im = new jalview.util.ImageMaker(this,
+              jalview.util.ImageMaker.TYPE.EPS,
               "Make EPS file from view", width, height, null,
               this.getTitle());
     }
+    else
+    {
+
+      im = new jalview.util.ImageMaker(this,
+              jalview.util.ImageMaker.TYPE.SVG, "Make SVG file from PCA",
+              width, height, null, this.getTitle());
+    }
 
     if (im.getGraphics() != null)
     {
@@ -1065,7 +1074,7 @@ public class AppJmol extends GStructureViewer implements Runnable,
       // Set the colour using the current view for the associated alignframe
       for (AlignmentPanel ap : _colourwith)
       {
-        jmb.colourBySequence(ap.av.showSequenceFeatures, ap);
+        jmb.colourBySequence(ap.av.isShowSequenceFeatures(), ap);
       }
     }
   }