import org.jmol.api.JmolAppConsoleInterface;
import org.jmol.java.BS;
-import org.jmol.popup.JmolAwtPopup;
import org.openscience.jmol.app.jmolpanel.console.AppConsole;
public class AppJmolBinding extends JalviewJmolBinding
public void updateColours(Object source)
{
- AlignmentPanel ap = (AlignmentPanel) source, topap;
+ AlignmentPanel ap = (AlignmentPanel) source;
// ignore events from panels not used to colour this view
if (!appJmolWindow.isUsedforcolourby(ap))
{
}
if (!isLoadingFromArchive())
{
- colourBySequence(ap.av.isShowSequenceFeatures(), ap);
+ colourBySequence(ap);
}
}
public void newJmolPopup(String menuName)
{
- jmolpopup = new JmolAwtPopup();
- jmolpopup.jpiInitialize((viewer), menuName);
+ // jmolpopup = new JmolAwtPopup();
+ // jmolpopup.jpiInitialize((viewer), menuName);
}
@Override