JAL-1015 refactor tooltip html generation code to jalview.io.SequenceAnnotationReport

[jalview.git] / src / jalview / gui / AppJmolBinding.java

diff --git a/src/jalview/gui/AppJmolBinding.java b/src/jalview/gui/AppJmolBinding.java
index 63813a9..df62eab 100644 (file)
--- a/src/jalview/gui/AppJmolBinding.java
+++ b/src/jalview/gui/AppJmolBinding.java
@@ -61,13 +61,12 @@ public class AppJmolBinding extends jalview.ext.jmol.JalviewJmolBinding
     AlignmentPanel ap = (alignment==null) ? appJmolWindow.ap : (AlignmentPanel) alignment;
     if (ap.av.showSequenceFeatures)
     {
-      if (fr == null)
+      if (fr==null)
       {
-        fr = new FeatureRenderer(ap);
+        fr=ap.cloneFeatureRenderer();
+      } else {
+        ap.updateFeatureRenderer(fr);
       }
-
-      fr.transferSettings(ap.
-              seqPanel.seqCanvas.getFeatureRenderer());
     }
 
     return fr;