Including of VARNAv-3.9;

[jalview.git] / src / jalview / gui / AppVarnaBinding.java

diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java
index c235fc1..88cc288 100644 (file)
--- a/src/jalview/gui/AppVarnaBinding.java
+++ b/src/jalview/gui/AppVarnaBinding.java
@@ -221,7 +221,6 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding imple
                                }
                        }
            });
-           
            _rnaList = new BackupHolder(dlm,_sideList);
                        
                try {
@@ -334,6 +333,23 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding imple
        public JPanel getListPanel(){
                return _listPanel;
        }
+       
+       /**
+        * TODO: Is it effective to transfer the whole RNA?
+        * @return Currently selected RNA
+        */
+       public RNA getSelectedRNA(){
+               return _rnaList.getElementAt(_sideList.getSelectedIndex()).rna;
+       }
+       
+       /**
+        * Substitute currently selected RNA with the edited one
+        * @param rnaEdit
+        */
+       public void updateSelectedRNA(RNA rnaEdit){
+               vp.repaint();
+               vp.showRNA(rnaEdit);
+       }
 
        /*
        private void RNAPanelDemoInit() 
@@ -845,6 +861,13 @@ public class AppVarnaBinding extends jalview.ext.varna.JalviewVarnaBinding imple
                // TODO Auto-generated method stub
                
        }
+
+  @Override
+  public void onStructureRedrawn()
+  {
+    // TODO Auto-generated method stub
+    
+  }
 }