SequenceI sequence, boolean prompt)
{
PDBEntry entry = new PDBEntry();
+ MCview.PDBfile pdbfile = null;
try
{
- MCview.PDBfile pdbfile = new MCview.PDBfile(choice, protocol);
-
+ // TODO JAL-674 extract secondary structure and transfer it to associated
+ // sequence
+ pdbfile = new MCview.PDBfile(false, false, choice, protocol);
if (pdbfile.id == null)
{
String reply = null;