import jalview.api.StructureSelectionManagerProvider;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
+import jalview.io.StructureFile;
import jalview.structure.StructureSelectionManager;
import jalview.util.MessageManager;
StructureSelectionManagerProvider ssmp)
{
PDBEntry entry = new PDBEntry();
- MCview.PDBfile pdbfile = null;
+ StructureFile pdbfile = null;
pdbfile = StructureSelectionManager.getStructureSelectionManager(ssmp)
- .setMapping(false, new SequenceI[]
- { sequence }, null, choice, protocol);
+ .setMapping(false, new SequenceI[] { sequence }, null, choice,
+ protocol);
if (pdbfile == null)
{
// stacktrace already thrown so just return
return null;
}
- if (pdbfile.id == null)
+ if (pdbfile.getId() == null)
{
String reply = null;
}
else
{
- entry.setId(pdbfile.id);
+ entry.setId(pdbfile.getId());
}
entry.setType(PDBEntry.Type.FILE);