package jalview.gui;
import javax.swing.JOptionPane;
-import javax.xml.parsers.ParserConfigurationException;
-
-import org.xml.sax.SAXException;
-
-import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;
-import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed;
-import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied;
-import fr.orsay.lri.varna.exceptions.ExceptionUnmatchedClosingParentheses;
-
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
+import jalview.util.MessageManager;
/**
* GUI related routines for associating PDB files with sequences
public class AssociatePdbFileWithSeq
{
-/**
- * assocate the given PDB file with
- * @param choice
- * @param sequence
- * @throws IOException
- */
- public PDBEntry associatePdbWithSeq(String choice, String protocol, SequenceI sequence, boolean prompt) throws Exception
+ /**
+ * assocate the given PDB file with
+ *
+ * @param choice
+ * @param sequence
+ */
+ public PDBEntry associatePdbWithSeq(String choice, String protocol,
+ SequenceI sequence, boolean prompt)
{
PDBEntry entry = new PDBEntry();
try
{
-
- System.out.println("This is a annotation PDB");
-
-
- MCview.PDBfile pdbfile = new MCview.PDBfile(choice,
- protocol);
+ MCview.PDBfile pdbfile = new MCview.PDBfile(choice, protocol);
if (pdbfile.id == null)
{
reply = JOptionPane
.showInternalInputDialog(
Desktop.desktop,
- "Couldn't find a PDB id in the file supplied."
- + "Please enter an Id to identify this structure.",
- "No PDB Id in File", JOptionPane.QUESTION_MESSAGE);
+ MessageManager.getString("label.couldnt_find_pdb_id_in_file"),
+ MessageManager.getString("label.no_pdb_id_in_file"), JOptionPane.QUESTION_MESSAGE);
}
if (reply == null)
{
{
entry.setId(pdbfile.id);
}
-
+
} catch (java.io.IOException ex)
{
ex.printStackTrace();
entry.setFile(choice);
sequence.getDatasetSequence().addPDBId(entry);
return entry;
-
}
-
}