String chain = null;
if (seq.getDatasetSequence() != null)
{
- Vector<PDBEntry> pdbrefs = seq.getDatasetSequence().getPDBId();
+ Vector<PDBEntry> pdbrefs = seq.getDatasetSequence().getAllPDBEntries();
if (pdbrefs != null && pdbrefs.size() > 0)
{
chain = pdbrefs.get(0).getChainCode();
if (pdbseq != null && pdbseq.getHeight() > 0)
{
// just use the file name from the first sequence's first PDBEntry
- filePath = new File(pdbseq.getSequenceAt(0).getPDBId()
+ filePath = new File(pdbseq.getSequenceAt(0).getAllPDBEntries()
.elementAt(0).getFile()).getAbsolutePath();
processingEntry.setFile(filePath);
}
is.close();
} catch (IOException e)
{
- // ignoreß
+ // ignore
}
}
}
- // return this.chimeraSessionFile == null ? "" : chimeraSessionFile;
}
@Override