private int myHeight = 150;
- /**
+ private JMenuItem writeFeatures=null;
+
+ private JMenu fetchAttributes=null;
+/**
* Initialise menu options.
*/
@Override
savemenu.setVisible(false); // not yet implemented
viewMenu.add(fitToWindow);
- JMenuItem writeFeatures = new JMenuItem(
+ writeFeatures = new JMenuItem(
MessageManager.getString("label.create_viewer_attributes"));
writeFeatures.setToolTipText(MessageManager
.getString("label.create_viewer_attributes_tip"));
});
viewerActionMenu.add(writeFeatures);
- final JMenu fetchAttributes = new JMenu(
+ fetchAttributes = new JMenu(
MessageManager.getString("label.fetch_chimera_attributes"));
fetchAttributes.setToolTipText(
MessageManager.getString("label.fetch_chimera_attributes_tip"));
});
viewerActionMenu.add(fetchAttributes);
}
-
+ @Override
+ protected void buildActionMenu()
+ {
+ super.buildActionMenu();
+ // add these back in after menu is refreshed
+ viewerActionMenu.add(writeFeatures);
+ viewerActionMenu.add(fetchAttributes);
+
+ };
/**
- * Query Chimera for its residue attribute names and add them as items off the
- * attributes menu
+ * Query the structure viewer for its residue attribute names and add them as
+ * items off the attributes menu
*
* @param attributesMenu
*/
@Override
public void actionPerformed(ActionEvent e)
{
- getChimeraAttributes(attName);
+ if (getBinding().copyStructureAttributesToFeatures(attName,
+ getAlignmentPanel()) > 0)
+ {
+ getAlignmentPanel().getFeatureRenderer().featuresAdded();
+ }
}
});
attributesMenu.add(menuItem);
}
/**
- * Read residues in Chimera with the given attribute name, and set as features
- * on the corresponding sequence positions (if any)
- *
- * @param attName
- */
- protected void getChimeraAttributes(String attName)
- {
- jmb.copyStructureAttributesToFeatures(attName, getAlignmentPanel());
- }
-
- /**
* Sends command(s) to the structure viewer to create residue attributes for
* visible Jalview features
*/
/*
* ensure that any newly discovered features (e.g. RESNUM)
- * are added to any open feature settings dialog
+ * are notified to the FeatureRenderer (and added to any
+ * open feature settings dialog)
*/
FeatureRenderer fr = getBinding().getFeatureRenderer(null);
if (fr != null)
}
@Override
- protected void fitToWindow_actionPerformed()
- {
- jmb.focusView();
- }
-
- @Override
public ViewerType getViewerType()
{
return ViewerType.CHIMERA;