Merge branch 'features/JAL-1605_html-svg-export' into develop

[jalview.git] / src / jalview / gui / ChimeraViewFrame.java

diff --git a/src/jalview/gui/ChimeraViewFrame.java b/src/jalview/gui/ChimeraViewFrame.java
index 02865e1..48123fa 100644 (file)
--- a/src/jalview/gui/ChimeraViewFrame.java
+++ b/src/jalview/gui/ChimeraViewFrame.java
@@ -244,9 +244,9 @@ public class ChimeraViewFrame extends GStructureViewer implements Runnable,
         // TODO : Fix multiple seq to one chain issue here.
         ap.getStructureSelectionManager().setMapping(seq, chains,
                 alreadyMapped, AppletFormatAdapter.FILE);
-        if (ap.seqPanel.seqCanvas.fr != null)
+        if (ap.getSeqPanel().seqCanvas.fr != null)
         {
-          ap.seqPanel.seqCanvas.fr.featuresAdded();
+          ap.getSeqPanel().seqCanvas.fr.featuresAdded();
           ap.paintAlignment(true);
         }
 
@@ -840,8 +840,13 @@ public class ChimeraViewFrame extends GStructureViewer implements Runnable,
     {
       if (progressBar != null)
       {
-        progressBar.setProgressBar(
-                MessageManager.getString("label.state_completed"), hdl);
+        progressBar
+                .setProgressBar(
+                        pdbid
+                                + " "
+                                + MessageManager
+                                        .getString("label.state_completed"),
+                        hdl);
       }
     }
     /*
@@ -979,7 +984,7 @@ public class ChimeraViewFrame extends GStructureViewer implements Runnable,
       // Set the colour using the current view for the associated alignframe
       for (AlignmentPanel ap : _colourwith)
       {
-        jmb.colourBySequence(ap.av.showSequenceFeatures, ap);
+        jmb.colourBySequence(ap.av.isShowSequenceFeatures(), ap);
       }
     }
   }