+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.gui;
+import jalview.datamodel.PDBEntry;
+import jalview.datamodel.SequenceI;
+import jalview.datamodel.StructureViewerModel;
import jalview.gui.StructureViewer.ViewerType;
/**
public class ChimeraXViewFrame extends ChimeraViewFrame
{
+ public ChimeraXViewFrame(PDBEntry pdb, SequenceI[] seqsForPdb,
+ String[] chains, AlignmentPanel ap)
+ {
+ super(pdb, seqsForPdb, chains, ap);
+ }
+
+ public ChimeraXViewFrame(PDBEntry[] pdbsForFile, boolean superposeAdded,
+ SequenceI[][] theSeqs, AlignmentPanel ap)
+ {
+ super(pdbsForFile, superposeAdded, theSeqs, ap);
+ }
+
+ /**
+ * Constructor given a session file to be loaded
+ *
+ * @param viewerData
+ * @param alignPanel
+ * @param sessionFile
+ * @param vid
+ */
+ public ChimeraXViewFrame(StructureViewerModel viewerData,
+ AlignmentPanel alignPanel, String sessionFile, String vid)
+ {
+ super(viewerData, alignPanel, sessionFile, vid);
+ }
+
@Override
public ViewerType getViewerType()
{
- return null;// ViewerType.CHIMERAX;
+ return ViewerType.CHIMERAX;
}
@Override
return "ChimeraX";
}
+ @Override
+ protected JalviewChimeraBindingModel newBindingModel(AlignmentPanel ap,
+ PDBEntry[] pdbentrys, SequenceI[][] seqs)
+ {
+ return new JalviewChimeraXBindingModel(this,
+ ap.getStructureSelectionManager(), pdbentrys, seqs, null);
+ }
}