import jalview.util.MapList;
import jalview.util.MappingUtils;
import jalview.util.MessageManager;
+import jalview.viewmodel.seqfeatures.FeatureRendererModel;
import jalview.ws.SequenceFetcher;
import java.util.ArrayList;
.isShowSequenceFeatures();
newFrame.setShowSeqFeatures(showSequenceFeatures);
copyThis.setShowSeqFeatures(showSequenceFeatures);
- FeatureRenderer myFeatureStyling = alignFrame.alignPanel
+ FeatureRendererModel myFeatureStyling = alignFrame.alignPanel
.getSeqPanel().seqCanvas.getFeatureRenderer();
/*
* copy feature rendering settings to split frame
*/
- FeatureRenderer fr1 = newFrame.alignPanel.getSeqPanel().seqCanvas
+ FeatureRendererModel fr1 = newFrame.alignPanel.getSeqPanel().seqCanvas
.getFeatureRenderer();
fr1.transferSettings(myFeatureStyling);
fr1.findAllFeatures(true);
- FeatureRenderer fr2 = copyThis.alignPanel.getSeqPanel().seqCanvas
+ FeatureRendererModel fr2 = copyThis.alignPanel.getSeqPanel().seqCanvas
.getFeatureRenderer();
fr2.transferSettings(myFeatureStyling);
fr2.findAllFeatures(true);
*/
String[] divisionsArray = ensemblDivisions
.toArray(new String[ensemblDivisions.size()]);
- DBRefEntry[] seqRefs = seq.getDBRefs();
- DBRefEntry[] directEnsemblRefs = DBRefUtils.selectRefs(seqRefs,
+ List<DBRefEntry> seqRefs = seq.getDBRefs();
+ List<DBRefEntry> directEnsemblRefs = DBRefUtils.selectRefs(seqRefs,
divisionsArray);
if (directEnsemblRefs != null)
{
{
if (dbref.getMap() != null && dbref.getMap().getTo() != null)
{
- DBRefEntry[] dbrefs = dbref.getMap().getTo().getDBRefs();
- DBRefEntry[] indirectEnsemblRefs = DBRefUtils.selectRefs(dbrefs,
+ List<DBRefEntry> dbrefs = dbref.getMap().getTo().getDBRefs();
+ List<DBRefEntry> indirectEnsemblRefs = DBRefUtils.selectRefs(dbrefs,
divisionsArray);
if (indirectEnsemblRefs != null)
{