/*\r
* Jalview - A Sequence Alignment Editor and Viewer\r
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
*\r
* This program is free software; you can redistribute it and/or\r
* modify it under the terms of the GNU General Public License\r
import jalview.io.*;\r
import jalview.jbgui.*;\r
\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
public class CutAndPasteTransfer\r
extends GCutAndPasteTransfer\r
{\r
- public void setForInput()\r
+\r
+ AlignViewport viewport;\r
+\r
+ public CutAndPasteTransfer()\r
+ {\r
+ SwingUtilities.invokeLater(new Runnable()\r
+ {\r
+ public void run()\r
+ {\r
+ textarea.requestFocus();\r
+ }\r
+ });\r
+\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ */\r
+ public void setForInput(AlignViewport viewport)\r
{\r
+ this.viewport = viewport;\r
+ if (viewport != null)\r
+ {\r
+ ok.setText("Add");\r
+ }\r
+\r
getContentPane().add(inputButtonPanel, java.awt.BorderLayout.SOUTH);\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @return DOCUMENT ME!\r
+ */\r
public String getText()\r
{\r
return textarea.getText();\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param text DOCUMENT ME!\r
+ */\r
public void setText(String text)\r
{\r
textarea.setText(text);\r
}\r
\r
+ public void appendText(String text)\r
+ {\r
+ textarea.append(text);\r
+ }\r
+\r
+ public void save_actionPerformed(ActionEvent e)\r
+ {\r
+ JalviewFileChooser chooser = new JalviewFileChooser(\r
+ jalview.bin.Cache.getProperty(\r
+ "LAST_DIRECTORY"));\r
+\r
+ chooser.setAcceptAllFileFilterUsed(false);\r
+ chooser.setFileView(new JalviewFileView());\r
+ chooser.setDialogTitle("Save Text to File");\r
+ chooser.setToolTipText("Save");\r
+\r
+ int value = chooser.showSaveDialog(this);\r
+\r
+ if (value == JalviewFileChooser.APPROVE_OPTION)\r
+ {\r
+ try\r
+ {\r
+ java.io.PrintWriter out = new java.io.PrintWriter(\r
+ new java.io.FileWriter(chooser.getSelectedFile()));\r
+\r
+ out.print(getText());\r
+ out.close();\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ ex.printStackTrace();\r
+ }\r
+\r
+ }\r
+ }\r
+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
public void copyItem_actionPerformed(ActionEvent e)\r
{\r
+ textarea.getSelectedText();\r
Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();\r
- c.setContents(new StringSelection(textarea.getText()), null);\r
+ c.setContents(new StringSelection(textarea.getSelectedText()), null);\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
public void pasteMenu_actionPerformed(ActionEvent e)\r
{\r
Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();\r
\r
try\r
{\r
- textarea.setText( (String) contents.getTransferData(\r
+ textarea.append( (String) contents.getTransferData(\r
DataFlavor.stringFlavor));\r
}\r
catch (Exception ex)\r
}\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
public void ok_actionPerformed(ActionEvent e)\r
{\r
- String format = IdentifyFile.Identify(getText(), "Paste");\r
- SequenceI[] sequences = null;\r
-\r
- if (FormatAdapter.formats.contains(format))\r
- {\r
- sequences = FormatAdapter.readFile(getText(), "Paste", format);\r
- }\r
+ String format = new IdentifyFile().Identify(getText(), "Paste");\r
+ Alignment al = null;\r
\r
- if (sequences != null)\r
+ if (FormatAdapter.isValidFormat(format))\r
{\r
- AlignFrame af = new AlignFrame(new Alignment(sequences));\r
- af.currentFileFormat = format;\r
- Desktop.addInternalFrame(af, "Cut & Paste input - " + format,\r
- AlignFrame.NEW_WINDOW_WIDTH,\r
- AlignFrame.NEW_WINDOW_HEIGHT);\r
- af.statusBar.setText("Successfully pasted alignment file");\r
-\r
try\r
{\r
- af.setMaximum(Preferences.showFullscreen);\r
+ al = new FormatAdapter().readFile(getText(), "Paste", format);\r
}\r
- catch (Exception ex)\r
+ catch (java.io.IOException ex)\r
{\r
+ JOptionPane.showInternalMessageDialog(Desktop.desktop,\r
+ "Couldn't read the pasted text.\n" +\r
+ ex.toString(),\r
+ "Error parsing text",\r
+ JOptionPane.WARNING_MESSAGE);\r
}\r
+ }\r
\r
- try\r
+ if (al != null)\r
+ {\r
+ if (viewport != null)\r
{\r
- this.setClosed(true);\r
+ for (int i = 0; i < al.getHeight(); i++)\r
+ {\r
+ viewport.getAlignment().addSequence(al.getSequenceAt(i));\r
+ }\r
+\r
+ viewport.firePropertyChange("alignment", null,\r
+ viewport.getAlignment().getSequences());\r
}\r
- catch (Exception ex)\r
+ else\r
{\r
+ AlignFrame af = new AlignFrame(al,\r
+ AlignFrame.DEFAULT_WIDTH,\r
+ AlignFrame.DEFAULT_HEIGHT);\r
+ af.currentFileFormat = format;\r
+ Desktop.addInternalFrame(af, "Cut & Paste input - " + format,\r
+ AlignFrame.DEFAULT_WIDTH,\r
+ AlignFrame.DEFAULT_HEIGHT);\r
+ af.statusBar.setText("Successfully pasted alignment file");\r
+\r
+ try\r
+ {\r
+ af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN", false));\r
+ }\r
+ catch (Exception ex)\r
+ {\r
+ }\r
}\r
}\r
- else\r
- {\r
- JOptionPane.showInternalMessageDialog(Desktop.desktop,\r
- "Couldn't read the pasted text.\n" +\r
- "Formats currently supported are\n" +\r
- "Fasta, MSF, Clustal, BLC, PIR, MSP, and PFAM",\r
- "Error parsing text",\r
- JOptionPane.WARNING_MESSAGE);\r
- }\r
}\r
\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param e DOCUMENT ME!\r
+ */\r
public void cancel_actionPerformed(ActionEvent e)\r
{\r
try\r
{\r
}\r
}\r
+\r
+ public void textarea_mousePressed(MouseEvent e)\r
+ {\r
+ if (SwingUtilities.isRightMouseButton(e))\r
+ {\r
+ JPopupMenu popup = new JPopupMenu("Edit");\r
+ JMenuItem item = new JMenuItem("Copy");\r
+ item.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ copyItem_actionPerformed(e);\r
+ }\r
+ });\r
+ popup.add(item);\r
+ item = new JMenuItem("Paste");\r
+ item.addActionListener(new ActionListener()\r
+ {\r
+ public void actionPerformed(ActionEvent e)\r
+ {\r
+ pasteMenu_actionPerformed(e);\r
+ }\r
+ });\r
+ popup.add(item);\r
+ popup.show(this, e.getX() + 10, e.getY() + textarea.getY() + 40);\r
+\r
+ }\r
+ }\r
+\r
}\r
git://source.jalview.org / jalview.git / blobdiff