af.getViewport().setShowSequenceFeatures(showSeqFeatures);
af.changeColour(cs);
- // ((HtmlFile) source).applySettingsToAlignmentView(af);
}
- // else if (source instanceof JSONFile)
- // {
- // ColumnSelection colSel = ((JSONFile) source).getColumnSelection();
- // SequenceI[] hiddenSeqs = ((JSONFile) source).getHiddenSequences();
- // boolean showSeqFeatures = ((HtmlFile) source).isShowSeqFeatures();
- // ColourSchemeI cs = ((HtmlFile) source).getColourScheme();
- // af = new AlignFrame(al, hiddenSeqs, colSel,
- // AlignFrame.DEFAULT_WIDTH,
- // AlignFrame.DEFAULT_HEIGHT);
- // af.getViewport().setShowSequenceFeatures(showSeqFeatures);
- // af.changeColour(cs);
- // // ((JSONFile) source).applySettingsToAlignmentView(af);
- // }
else
{
af = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH,