Conservation and PID colouring methods updated

[jalview.git] / src / jalview / gui / Desktop.java

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 464ec59..2c475fa 100755 (executable)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -12,6 +12,7 @@ package jalview.gui;
 import jalview.gui.*;\r
 import jalview.io.*;\r
 import jalview.datamodel.*;\r
+import jalview.schemes.*;\r
 import javax.swing.*;\r
 import java.awt.*;\r
 import java.awt.event.*;\r
@@ -261,4 +262,86 @@ public class Desktop extends jalview.jbgui.GDesktop
    }\r
  }\r
 \r
+ static JInternalFrame conservationSlider;\r
+ static JInternalFrame PIDSlider;\r
+ public static int setConservationSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)\r
+ {\r
+   SliderPanel sp = null;\r
+\r
+   if(conservationSlider == null)\r
+   {\r
+     sp = new SliderPanel(ap, 30, true, cs);\r
+     conservationSlider = new JInternalFrame();\r
+     conservationSlider.setContentPane(sp);\r
+     conservationSlider.setResizable(false);\r
+     addInternalFrame(conservationSlider, "Conservation Colour Increment  ("+source+")", 420, 90);\r
+     conservationSlider.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()\r
+                  {\r
+                    public void internalFrameClosed(javax.swing.event.InternalFrameEvent e)\r
+                    {\r
+                      conservationSlider = null;\r
+                    }\r
+                  });\r
+   }\r
+   else\r
+   {\r
+       conservationSlider.setTitle("Conservation Colour Increment  ("+source+")");\r
+       sp = (SliderPanel)conservationSlider.getContentPane();\r
+       sp.cs = cs;\r
+   }\r
+\r
+   if(ap.av.alignment.getGroups()!=null)\r
+     sp.setAllGroupsCheckEnabled( true );\r
+   else\r
+     sp.setAllGroupsCheckEnabled( false);\r
+\r
+   return sp.getValue();\r
+\r
+ }\r
+\r
+ public static void hideConservationSlider()\r
+ {\r
+  try{\r
+    conservationSlider.setClosed(true);\r
+    conservationSlider = null;\r
+  }catch(Exception ex){}\r
+}\r
+\r
+\r
+ public static void hidePIDSlider()\r
+ {\r
+   try{\r
+     PIDSlider.setClosed(true);\r
+     PIDSlider = null;\r
+   }catch(Exception ex){}\r
+ }\r
+\r
+ public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)\r
+ {\r
+   SliderPanel pid = null;\r
+   if(PIDSlider == null)\r
+   {\r
+     pid = new SliderPanel(ap, 50, false, cs);\r
+     PIDSlider = new JInternalFrame();\r
+     PIDSlider.setContentPane(pid);\r
+     PIDSlider.setResizable(false);\r
+     addInternalFrame(PIDSlider, "Percentage Identity Threshold ("+source+")", 420, 90);\r
+   }\r
+   else\r
+   {\r
+       PIDSlider.setTitle("Percentage Identity Threshold ("+source+")");\r
+       pid = (SliderPanel)PIDSlider.getContentPane();\r
+       pid.cs = cs;\r
+   }\r
+\r
+   if (ap.av.alignment.getGroups() != null)\r
+     pid.setAllGroupsCheckEnabled(true);\r
+   else\r
+     pid.setAllGroupsCheckEnabled(false);\r
+\r
+\r
+   return pid.getValue();\r
+\r
+ }\r
+\r
 }\r