import java.awt.Point;
import java.awt.Rectangle;
import java.awt.Toolkit;
+import java.awt.Window;
import java.awt.datatransfer.Clipboard;
import java.awt.datatransfer.ClipboardOwner;
import java.awt.datatransfer.DataFlavor;
import java.io.BufferedInputStream;
import java.io.File;
import java.io.FileOutputStream;
-import java.lang.reflect.Constructor;
import java.net.URL;
import java.util.ArrayList;
import java.util.Hashtable;
*/
instance = this;
doVamsasClientCheck();
- doGroovyCheck();
+
+ groovyShell = new JMenuItem();
+ groovyShell.setText(MessageManager.getString("label.groovy_console"));
+ groovyShell.addActionListener(new ActionListener()
+ {
+ @Override
+ public void actionPerformed(ActionEvent e)
+ {
+ groovyShell_actionPerformed();
+ }
+ });
+ toolsMenu.add(groovyShell);
+ groovyShell.setVisible(true);
+
doConfigureStructurePrefs();
setTitle("Jalview " + jalview.bin.Cache.getProperty("VERSION"));
setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
@Override
public void mousePressed(MouseEvent evt)
{
- if (SwingUtilities.isRightMouseButton(evt))
+ if (evt.isPopupTrigger())
{
showPasteMenu(evt.getX(), evt.getY());
}
{
new FileLoader().LoadFile(viewport, choice, FormatAdapter.FILE,
format);
- // viewport.setShowSequenceFeatures(JSONFile.isSeqFeaturesEnabled());
- // AlignFrame af = viewport.getAlignPanel().alignFrame;
- // if (af != null)
- // {
- // af.changeColour(JSONFile.getColourScheme());
- // af.setMenusForViewport();
- // }
}
else
{
protected JMenuItem groovyShell;
- public void doGroovyCheck()
- {
- if (jalview.bin.Cache.groovyJarsPresent())
- {
- groovyShell = new JMenuItem();
- groovyShell.setText(MessageManager.getString("label.groovy_console"));
- groovyShell.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- groovyShell_actionPerformed();
- }
- });
- toolsMenu.add(groovyShell);
- groovyShell.setVisible(true);
- }
- }
-
/**
* Accessor method to quickly get all the AlignmentFrames loaded.
*
*/
public void groovyShell_actionPerformed()
{
- // use reflection to avoid creating compilation dependency.
- if (!jalview.bin.Cache.groovyJarsPresent())
- {
- throw new Error(
- MessageManager
- .getString("error.implementation_error_cannot_create_groovyshell"));
- }
try
{
- Class<?> gcClass = Desktop.class.getClassLoader().loadClass(
- "groovy.ui.Console");
- Constructor<?> gccons = gcClass.getConstructor();
- java.lang.reflect.Method setvar = gcClass.getMethod("setVariable",
- new Class[] { String.class, Object.class });
- java.lang.reflect.Method run = gcClass.getMethod("run");
- Object gc = gccons.newInstance();
- setvar.invoke(gc, new Object[] { "Jalview", this });
- run.invoke(gc);
+ openGroovyConsole();
} catch (Exception ex)
{
jalview.bin.Cache.log.error("Groovy Shell Creation failed.", ex);
}
/**
+ * Open the Groovy console
+ */
+ void openGroovyConsole()
+ {
+ groovyConsole = new groovy.ui.Console();
+
+ /*
+ * bind groovy variable 'Jalview' to the Desktop object
+ */
+ groovyConsole.setVariable("Jalview", this);
+
+ /*
+ * start the console
+ */
+ groovyConsole.run();
+
+ /*
+ * Allow only one console at a time, so that the AlignFrame menu option
+ * 'Calculate | Run Groovy script' is unambiguous.
+ * Disable 'new console', and enable 'Run script', when the console is
+ * opened, and the reverse when it is closed
+ */
+ Window window = (Window) groovyConsole.getFrame();
+ window.addWindowListener(new WindowAdapter()
+ {
+ @Override
+ public void windowClosed(WindowEvent e)
+ {
+ groovyShell.setEnabled(true);
+ enableExecuteGroovy(false);
+ }
+ });
+
+ /*
+ * if we got this far, enable 'Run Groovy' in AlignFrame menus
+ * and disable opening a second console
+ */
+ groovyShell.setEnabled(false);
+ enableExecuteGroovy(true);
+ }
+
+ /**
+ * Enable or disable 'Run Groovy script' in AlignFrame calculate menus
+ *
+ * @param enabled
+ */
+ public void enableExecuteGroovy(boolean enabled)
+ {
+ AlignFrame[] alignFrames = getAlignFrames();
+ if (alignFrames != null)
+ {
+ for (AlignFrame af : alignFrames)
+ {
+ af.setGroovyEnabled(enabled);
+ }
+ }
+ }
+
+ /**
* Progress bars managed by the IProgressIndicator method.
*/
private Hashtable<Long, JPanel> progressBars;
*/
private java.util.concurrent.Semaphore block = new Semaphore(0);
+ private static groovy.ui.Console groovyConsole;
+
/**
* add another dialog thread to the queue
*
Desktop.currentAlignFrame = currentAlignFrame;
}
+ public static groovy.ui.Console getGroovyConsole()
+ {
+ return groovyConsole;
+ }
+
}